RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LHFPL1Q86WI0 220 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 COMMD2Q86X83 199 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 FNDC9Q8TBE3 224 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 OR51E1Q8TCB6 317 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 FRZBQ92765 325 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 ELSPBP1Q96BH3 223 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 MVB12AQ96EY5 273 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 DGAT2Q96PD7 388 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 C2orf88Q9BSF0 95 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 SLCO1B1Q9Y6L6 691 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 UTS2O95399 124 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 TRGC1P0CF51 173 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF823P16415 610 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 HSD11B1P28845 292 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 UCP2P55851 309 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 SLC26A5P58743 744 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF117Q03924 483 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 NFATC4Q14934 902 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 RPP25Q9BUL9 199 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 ADAM19Q9H013 955 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 NXF5Q9H1B4 397 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 S1PR5Q9H228 398 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 HRASLS2Q9NWW9 162 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 MRPS28Q9Y2Q9 187 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 MEMO1Q9Y316 297 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 TMEM184BQ9Y519 407 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 SHANK1Q9Y566 2161 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 CLDN16Q9Y5I7 305 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 TDRD6O60522 2096 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 OR5H15A6NDH6 313 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 OR5H1A6NKK0 313 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF587BE7ETH6 402 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 BCAT2O15382 392 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 KAT7O95251 611 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 TBPP20226 339 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 MAS1LP35410 378 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 RGS19P49795 217 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 UBE2KP61086 200 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 PKIAP61925 76 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 DLK1P80370 383 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 GLO1Q04760 184 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 BAHD1Q8TBE0 780 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 DTD1Q8TEA8 209 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 WDR92Q96MX6 357 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 B3GALT5Q9Y2C3 310 aa11.86□□□□□ -0.51
CCDC88C-201ENST00000331194 CDC14BO60729 498 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 ISG15P05161 165 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 NKX6-1P78426 367 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 FOXK1P85037 733 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 TMEM31Q5JXX7 168 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 C1QL2Q7Z5L3 287 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 CARFQ8N187 725 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 ZFP62Q8NB50 900 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 C1orf147Q96MC9 270 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 HDHD3Q9BSH5 251 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 NKX2-4Q9H2Z4 354 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 RIMS4Q9H426 269 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 A8MVM7 634 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 IL2RGP31785 369 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 APLNRP35414 380 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 NOVA1P51513 510 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 RAB1AP62820 205 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 NAXEQ8NCW5 288 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 S100A13Q99584 98 aa11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF701Q9NV72 531 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-201ENST00000331194 CEACAM18A8MTB9 384 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 GNG10P50151 68 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 RAB4BP61018 213 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 TMEM59Q9BXS4 323 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 PRTFDC1Q9NRG1 225 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 MED29Q9NX70 200 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 LIPGQ9Y5X9 500 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 FCARP24071 287 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 NUTF2P61970 127 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 P4HA3Q7Z4N8 544 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 HPSE2Q8WWQ2 592 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 GAL3ST4Q96RP7 486 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 EMC6Q9BV81 110 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 PBOV1Q9GZY1 135 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 TXNIPQ9H3M7 391 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 VSX1Q9NZR4 365 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF878C9JN71 531 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 SLC33A1O00400 549 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 SEC11BP0C7V7 166 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 PGA4P0DJD7 388 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 PGA5P0DJD9 388 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 RND3P61587 244 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 RPS21P63220 83 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 RSPO4Q2I0M5 234 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF542PQ5EBM4 170 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 LYZL2Q7Z4W2 148 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 CYB561D1Q8N8Q1 229 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 OR52M1Q8NGK5 317 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 OR5D14Q8NGL3 314 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 GPBAR1Q8TDU6 330 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 DAZLQ92904 295 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 FAM71F1Q96KD3 344 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 SNX22Q96L94 193 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 PACRGQ96M98 296 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 GPER1Q99527 375 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms