RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 RAB3AP20336 220 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 ACKR3P25106 362 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 PCP4P48539 62 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 FAM3AP98173 230 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF782Q6ZMW2 699 aaPredicted RBP8.65□□□□□ -1.03
HMGB3-201ENST00000325307 Q8N402 240 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 JAGN1Q8N5M9 183 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 FAM169BQ8N8A8 192 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 BHLHE23Q8NDY6 225 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 OR51A2Q8NGJ7 313 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 NPRL2Q8WTW4 380 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 RNASE6Q93091 150 aaKnown RBP8.65□□□□□ -1.03
HMGB3-201ENST00000325307 DMRTB1Q96MA1 342 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 POFUT1Q9H488 388 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 ELF5Q9UKW6 265 aaPredicted RBP8.65□□□□□ -1.03
HMGB3-201ENST00000325307 V9GY05 133 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 V9GYS6 101 aa8.65□□□□□ -1.03
HMGB3-201ENST00000325307 hCG_38984A0A1B0GV85 526 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 NOS1APO75052 506 aaPredicted RBP8.64□□□□□ -1.03
HMGB3-201ENST00000325307 IGLV3-1P01715 115 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 TMEM11P17152 192 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 RAD52P43351 418 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 KIR2DL3P43628 341 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 NAAAQ02083 359 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 IL18Q14116 193 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 CDSNQ15517 529 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 HES5Q5TA89 166 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 TMEM65Q6PI78 240 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 METAP1DQ6UB28 335 aaPredicted RBP8.64□□□□□ -1.03
HMGB3-201ENST00000325307 CCDC54Q8NEL0 328 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 TINAGL1Q9GZM7 467 aaPredicted RBP8.64□□□□□ -1.03
HMGB3-201ENST00000325307 FOXJ3Q9UPW0 622 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 HCKP08631 526 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 ADRA2CP18825 462 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 FSTP19883 344 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 ERVS71-1P61550 626 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 LRRTM1Q86UE6 522 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 OR1M1Q8NGA1 313 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 OR56B2PQ8NGI1 322 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF671Q8TAW3 534 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 TRMT10AQ8TBZ6 339 aaKnown RBP8.64□□□□□ -1.03
HMGB3-201ENST00000325307 ACOT12Q8WYK0 555 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 PIGCQ92535 297 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 WFIKKN1Q96NZ8 548 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 NKX3-1Q99801 234 aaPredicted RBP8.64□□□□□ -1.03
HMGB3-201ENST00000325307 OR2J1Q9GZK6 312 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 EXTL2Q9UBQ6 330 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 NDRG3Q9UGV2 375 aa8.64□□□□□ -1.03
HMGB3-201ENST00000325307 LOC390937A0A1W2PQ73 354 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 PPP3CBP16298 524 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 GRNP28799 593 aaKnown RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 CALCRP30988 508 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 THBS4P35443 961 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 SCN1BQ07699 218 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 TMEM108Q6UXF1 575 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 LRRC28Q86X40 367 aaPredicted RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 SAMD12Q8N8I0 201 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 SLC25A40Q8TBP6 338 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 DEDD2Q8WXF8 326 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 SPSB4Q96A44 273 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 REPIN1Q9BWE0 567 aaKnown RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 PAPOLGQ9BWT3 736 aaKnown RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 OPA3Q9H6K4 179 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 TMEM138Q9NPI0 162 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 GPR173Q9NS66 373 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 RELNP78509 3460 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF35P13682 527 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 SNRPBP14678 240 aaKnown RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 PTBP1P26599 531 aaKnown RBP eCLIP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 BDKRB2P30411 391 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 ZBTB37Q5TC79 503 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 GLT8D1Q68CQ7 371 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 ASPHD2Q6ICH7 369 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 MZT2AQ6P582 158 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 VHLLQ6RSH7 139 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 PP6455Q8WZ26 134 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 KCTD12Q96CX2 325 aaKnown RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 SPACA5Q96QH8 159 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 CITED4Q96RK1 184 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 NGBQ9NPG2 151 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 FZR1Q9UM11 496 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 HEATR1Q9H583 2144 aaKnown RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 RAB19A4D1S5 217 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 MEGF11A6BM72 1044 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 J3QW42 95 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 ERCC1P07992 297 aaPredicted RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 SNTB2Q13425 540 aaKnown RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 OR2T2Q6IF00 324 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 OR5AS1Q8N127 324 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 FTMTQ8N4E7 242 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 LINC01560Q8TB33 94 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 CMBLQ96DG6 245 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 ABHD1Q96SE0 405 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 GPER1Q99527 375 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 OR10A4Q9H209 315 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 NCOR1P1Q9H4R4 102 aa8.63□□□□□ -1.03
HMGB3-201ENST00000325307 CGGBP1Q9UFW8 167 aaPredicted RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 SPTBN1Q01082 2364 aaKnown RBP8.63□□□□□ -1.03
HMGB3-201ENST00000325307 CADP27708 2225 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF816-ZNF321PA0A0X1KG74 233 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms