RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TCTN1Q2MV58 587 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 DMRTC1Q5HYR2 192 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF468Q5VIY5 522 aaPredicted RBP11.48□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF547Q8IVP9 402 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 FER1L6-AS2Q96M78 137 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 C3orf85A0A1B0GTC6 90 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 OR2W5A6NFC9 320 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 RBFOX3A6NFN3 312 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 PNRC1Q12796 327 aaPredicted RBP11.48□□□□□ -0.57
COL3A1-201ENST00000304636 MLF2Q15773 248 aaPredicted RBP11.48□□□□□ -0.57
COL3A1-201ENST00000304636 TRMT61AQ96FX7 289 aaKnown RBP11.48□□□□□ -0.57
COL3A1-201ENST00000304636 C1QTNF6Q9BXI9 259 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 PCDHGA9Q9Y5G4 932 aaKnown RBP11.48□□□□□ -0.57
COL3A1-201ENST00000304636 ARL2-SNX15V9GYD0 113 aa11.48□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF98A6NK75 572 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ERVH48-1M5A8F1 160 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 DVL1O14640 695 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ADAP1O75689 374 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ZGLP1P0C6A0 271 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 LIMK1P53667 647 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 TMEM65Q6PI78 240 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 CLEC18BQ6UXF7 455 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 TOMM20LQ6UXN7 152 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 LINC00696Q6ZRV3 163 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 TMEM178AQ8NBL3 297 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 NPEPL1Q8NDH3 523 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF391Q9UJN7 358 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF891A8MT65 544 aaPredicted RBP11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ADAM20O43506 726 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 OR7C2O60412 319 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 RAC1P63000 192 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 PRO1933Q9H354 126 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 SH3BGRL2Q9UJC5 107 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 IGHV3-15A0A0B4J1V0 119 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 MASP2O00187 686 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 CRYBA1P05813 215 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 CTSDP07339 412 aaPredicted RBP11.47□□□□□ -0.57
COL3A1-201ENST00000304636 B4GALT1P15291 398 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 GFERP55789 205 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 OR1F12Q8NHA8 337 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 LYRM2Q9NU23 88 aaPredicted RBP11.47□□□□□ -0.57
COL3A1-201ENST00000304636 FOCADQ5VW36 1801 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 LILRA5A6NI73 299 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF17P17021 662 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 OR3A4PP47883 348 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 HNRNPA3P51991 378 aaKnown RBP11.47□□□□□ -0.57
COL3A1-201ENST00000304636 CLN3Q13286 438 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ISXQ2M1V0 245 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 ADPRHL1Q8NDY3 354 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 C8orf44Q96CB5 159 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 CA10Q9NS85 328 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 SCN1AP35498 2009 aa11.47□□□□□ -0.57
COL3A1-201ENST00000304636 hCG_1809904A0A1W2PP81 198 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 A0A1W2PR64 198 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 A0A1W2PRV1 198 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 TNFSF11O14788 317 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 CXCL13O43927 109 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 OPN1MWP04001 364 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 OPN1MW2P0DN77 364 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 OPN1MW3P0DN78 364 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 P2RY1P47900 373 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 RRADP55042 308 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 MYBPHQ13203 477 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 LPAL2Q16609 132 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 CLDN23Q96B33 292 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 ALX4Q9H161 411 aaPredicted RBP11.46□□□□□ -0.57
COL3A1-201ENST00000304636 FAM24AA6NFZ4 105 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 MFNGO00587 321 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 RAB35Q15286 201 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 TMEM196Q5HYL7 178 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 ZNF770Q6IQ21 691 aaPredicted RBP11.46□□□□□ -0.57
COL3A1-201ENST00000304636 VN1R4Q7Z5H5 301 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 MRGPREQ86SM8 312 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 MAP1LC3B2A6NCE7 125 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 OR5AC1P0C628 307 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 NCMAPQ5T1S8 102 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 COX14Q96I36 57 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 MOGAT1Q96PD6 335 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 MAP1LC3BQ9GZQ8 125 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 KCNK15Q9H427 330 aa11.46□□□□□ -0.57
COL3A1-201ENST00000304636 GLI3P10071 1580 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 C7orf77A4D0Y5 90 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 ABCD4O14678 606 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 MMP7P09237 267 aaPredicted RBP11.46□□□□□ -0.58
COL3A1-201ENST00000304636 C6orf201Q7Z4U5 140 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 A0A1W2PPC4 97 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 ALG1L2C9J202 215 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 CTLA4P16410 223 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 ETFDHQ16134 617 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 PLAC9Q5JTB6 97 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 EDARADDQ8WWZ3 215 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 FAAP24Q9BTP7 215 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 FLRT3Q9NZU0 649 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 TNFSF18Q9UNG2 199 aa11.46□□□□□ -0.58
COL3A1-201ENST00000304636 LRRC30A6NM36 301 aa11.45□□□□□ -0.58
COL3A1-201ENST00000304636 PLPP3O14495 311 aa11.45□□□□□ -0.58
COL3A1-201ENST00000304636 CD1AP06126 327 aa11.45□□□□□ -0.58
COL3A1-201ENST00000304636 BPIFB3P59826 476 aa11.45□□□□□ -0.58
COL3A1-201ENST00000304636 ERVFC1-1P60608 527 aa11.45□□□□□ -0.58
COL3A1-201ENST00000304636 TMEM267Q0VDI3 215 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms