RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NKAPLQ5M9Q1 402 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 JMJD6Q6NYC1 403 aaPredicted RBP17.49■□□□□ 0.39
VPS53-201ENST00000291074 CPT1CQ8TCG5 803 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 VRK1Q99986 396 aaPredicted RBP17.49■□□□□ 0.39
VPS53-201ENST00000291074 STRADBQ9C0K7 418 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 ZNF701Q9NV72 531 aaPredicted RBP17.49■□□□□ 0.39
VPS53-201ENST00000291074 MED13Q9UHV7 2174 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 IGKV1-27A0A075B6S5 117 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 IGKV1D-8A0A087WSZ0 117 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 C5orf51A6NDU8 294 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 MFSD2BA6NFX1 497 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 FAM74A1Q5RGS3 127 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 KCNRGQ8N5I3 272 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 ST8SIA2Q92186 375 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 TM2D1Q9BX74 207 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 EHFQ9NZC4 300 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 MBD2Q9UBB5 411 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 MCTS1Q9ULC4 181 aaKnown RBP17.49■□□□□ 0.39
VPS53-201ENST00000291074 ZNF407Q9C0G0 2248 aa17.49■□□□□ 0.39
VPS53-201ENST00000291074 DBX1A6NMT0 343 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 CELA3AP09093 270 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 SLC25A4P12235 298 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 OR3A2P47893 321 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 GFRA1P56159 465 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 SCRN3Q0VDG4 424 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 TMEM128Q5BJH2 165 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 AADACL3Q5VUY0 350 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 OR5M9Q8NGP3 310 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 ZNF75AQ96N20 296 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 SIGLEC12Q96PQ1 595 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 KCNMB2Q9Y691 235 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 OR6C6A6NF89 314 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 CPT2P23786 658 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 TAS2R31P59538 309 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 OR1S1Q8NH92 325 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 SPRY4Q9C004 299 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.48■□□□□ 0.39
VPS53-201ENST00000291074 DNAJC13O75165 2243 aa17.48■□□□□ 0.39
VPS53-201ENST00000291074 A0A0D9SG52 128 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 ZNHIT1O43257 154 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 CBX5P45973 191 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 SRYQ05066 204 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 SKA3Q8IX90 412 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 LINC00052Q96N35 136 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 RTBDNQ9BSG5 229 aaPredicted RBP17.47■□□□□ 0.39
VPS53-201ENST00000291074 WNT5BQ9H1J7 359 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 GPR35Q9HC97 309 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 MSTNO14793 375 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 ADAP1O75689 374 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 LUMP51884 338 aaPredicted RBP17.47■□□□□ 0.39
VPS53-201ENST00000291074 SUPT4H1P63272 117 aaKnown RBP17.47■□□□□ 0.39
VPS53-201ENST00000291074 CLEC18BQ6UXF7 455 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 LHFPL1Q86WI0 220 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 C10orf35Q96D05 121 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 OR2H1Q9GZK4 316 aa17.47■□□□□ 0.39
VPS53-201ENST00000291074 CNR1P21554 472 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 FPR2P25090 351 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 RIPPLY1Q0D2K3 151 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 CDCP2Q5VXM1 449 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 FAM219AQ8IW50 185 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 OSGIN2Q9Y236 505 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 ARID1AO14497 2285 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 KANTRA0A1W2PQU2 76 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 CEACAM18A8MTB9 384 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 MPTX1A8MV57 137 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 B8ZZF3 427 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 NEURL1O76050 574 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 GLRA1P23415 457 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 PEG10Q86TG7 708 aaKnown RBP17.46■□□□□ 0.39
VPS53-201ENST00000291074 SULF2Q8IWU5 870 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 Q96M66 194 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 PPA2Q9H2U2 334 aa17.46■□□□□ 0.39
VPS53-201ENST00000291074 SERPINE3A8MV23 424 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 CYTIPO60759 359 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 ZNF883P0CG24 379 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 UBA52P62987 128 aaKnown RBP17.45■□□□□ 0.38
VPS53-201ENST00000291074 ZNF345Q14585 488 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 TAF9Q16594 264 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 TMEM185AQ8NFB2 350 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 THAP6Q8TBB0 222 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 ZPBPQ9BS86 351 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 PLEKHJ1Q9NW61 149 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 FIGNL2A6NMB9 653 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 LGALS8O00214 317 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 BCL2L11O43521 198 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 OR2F2O95006 317 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 SFT2D2O95562 160 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 SERPINA5P05154 406 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 CRHP06850 196 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 OR2F1Q13607 317 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 ANKRD55Q3KP44 614 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 CHRFAM7AQ494W8 412 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 TSPO2Q5TGU0 170 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 C9orf135Q5VTT2 229 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 ZBTB44Q8NCP5 570 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 OR5AP2Q8NGF4 316 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 CPNE4Q96A23 557 aaPredicted RBP17.45■□□□□ 0.38
VPS53-201ENST00000291074 DDA1Q9BW61 102 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 ZNF471Q9BX82 626 aaPredicted RBP17.45■□□□□ 0.38
VPS53-201ENST00000291074 CHMP1AQ9HD42 196 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms