RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 WDR89Q96FK6 387 aaPredicted RBP17.12■□□□□ 0.33
UPF1-201ENST00000262803 RNF2Q99496 336 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 DOK1Q99704 481 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 ZNF586Q9NXT0 402 aa17.12■□□□□ 0.33
UPF1-201ENST00000262803 DBX1A6NMT0 343 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 MAMSTRQ6ZN01 415 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 OR4F17Q8NGA8 305 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 TMED3Q9Y3Q3 217 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 SPRY3O43610 288 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 KLF3P57682 345 aaPredicted RBP17.11■□□□□ 0.33
UPF1-201ENST00000262803 RPUSD3Q6P087 351 aaKnown RBP17.11■□□□□ 0.33
UPF1-201ENST00000262803 HGDQ93099 445 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 CXXC4Q9H2H0 198 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 SOX15O60248 233 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 OR2C1O95371 312 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 GUCA2AQ02747 115 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 TMEM215Q68D42 235 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 Q6ZS52 159 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 GALNT16Q8N428 558 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 TEX29Q8N6K0 151 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 OR2Z1Q8NG97 314 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 SLC26A1Q9H2B4 701 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 ONECUT1Q9UBC0 465 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 LRP12Q9Y561 859 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 OR4C3Q8NH37 302 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 PPP1R1CQ8WVI7 109 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 ALKBH3Q96Q83 286 aaPredicted RBP17.11■□□□□ 0.33
UPF1-201ENST00000262803 TMEM231Q9H6L2 316 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 A0A1W2PQD3 144 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 ZNF785A8K8V0 405 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 ZNF117Q03924 483 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 AKR7LQ8NHP1 331 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 C10orf35Q96D05 121 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 WDFY2Q96P53 400 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 TMEM147Q9BVK8 224 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 OR6C3Q9NZP0 311 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 ZNF835Q9Y2P0 537 aa17.11■□□□□ 0.33
UPF1-201ENST00000262803 USP54Q70EL1 1684 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 FGF7P21781 194 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 GPM6AP51674 278 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 RHBDD2Q6NTF9 364 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 WDR74Q6RFH5 385 aaPredicted RBP17.1■□□□□ 0.33
UPF1-201ENST00000262803 OR13D1Q8NGV5 346 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 SEBOXQ9HB31 216 aaPredicted RBP17.1■□□□□ 0.33
UPF1-201ENST00000262803 CTSVO60911 334 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 IGHA2P01877 340 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 CD3EP07766 207 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 PCMT1P22061 227 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 KIAA0141Q14154 515 aaPredicted RBP17.1■□□□□ 0.33
UPF1-201ENST00000262803 ZNF141Q15928 474 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 TIPARPQ7Z3E1 657 aaKnown RBP17.1■□□□□ 0.33
UPF1-201ENST00000262803 DEFB124Q8NES8 71 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 CYB5R1Q9UHQ9 305 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 SRP14P37108 136 aaKnown RBP17.1■□□□□ 0.33
UPF1-201ENST00000262803 RAB40CQ96S21 281 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 SMCHD1A6NHR9 2005 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 PYCARD-AS1I3L0S3 204 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 TMIGD3P0DMS9 266 aaPredicted RBP17.1■□□□□ 0.33
UPF1-201ENST00000262803 PJVKQ0ZLH3 352 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 PRSS42Q7Z5A4 293 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 VSTM2AQ8TAG5 236 aa17.1■□□□□ 0.33
UPF1-201ENST00000262803 MBD1Q9UIS9 605 aaPredicted RBP17.1■□□□□ 0.33
UPF1-201ENST00000262803 IGHV3-64DA0A0J9YX35 117 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 INSL4Q14641 139 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 DMRTC1Q5HYR2 192 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 ATP5SQ99766 215 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 SERTM2A0A1B0GWG4 89 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 NGFP01138 241 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 CD37P11049 281 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 FAHP16930 419 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 BRS3P32247 399 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 STUMQ69YW2 141 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 DHRS13Q6UX07 377 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 ASCL5Q7RTU5 278 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 OR5M8Q8NGP6 311 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 PIK3IP1Q96FE7 263 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 STRCQ7RTU9 1775 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 PLPP2O43688 288 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 OR2B11Q5JQS5 317 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 C1orf174Q8IYL3 243 aa17.09■□□□□ 0.33
UPF1-201ENST00000262803 NCBP2LA6PVI3 153 aaKnown RBP17.08■□□□□ 0.33
UPF1-201ENST00000262803 IAPPP10997 89 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 RAB5AP20339 215 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 P2RX3P56373 397 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 TNFAIP6P98066 277 aaPredicted RBP17.08■□□□□ 0.33
UPF1-201ENST00000262803 DGAT2L6Q6ZPD8 337 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 M0R1X1 148 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 M0R296 226 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 PCBP3P57721 371 aaKnown RBP17.08■□□□□ 0.33
UPF1-201ENST00000262803 ST8SIA2Q92186 375 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 SARGQ9BW04 601 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 CTDSP1Q9GZU7 261 aa17.08■□□□□ 0.33
UPF1-201ENST00000262803 ORM1P02763 201 aa17.08■□□□□ 0.32
UPF1-201ENST00000262803 LCN15Q6UWW0 184 aa17.08■□□□□ 0.32
UPF1-201ENST00000262803 PRSS23O95084 383 aa17.08■□□□□ 0.32
UPF1-201ENST00000262803 CD160O95971 181 aa17.08■□□□□ 0.32
UPF1-201ENST00000262803 RPL13AP40429 203 aaKnown RBP17.08■□□□□ 0.32
UPF1-201ENST00000262803 SIGLEC14Q08ET2 396 aa17.08■□□□□ 0.32
UPF1-201ENST00000262803 HAGHQ16775 308 aa17.08■□□□□ 0.32
UPF1-201ENST00000262803 CD300LDQ6UXZ3 194 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms