RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 GAAP10253 952 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ZNF32P17041 273 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 BLVRBP30043 206 aaPredicted RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 HRH1P35367 487 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 OPRM1P35372 400 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 MTCP1P56278 107 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 BTG1P62324 171 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ZP4Q12836 540 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 METTL11BQ5VVY1 283 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 NSUN5P2Q63ZY6 315 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 NLRC3Q7RTR2 1065 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ELMOD2Q8IZ81 293 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 BOLLQ8N9W6 283 aaKnown RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 PNLDC1Q8NA58 520 aaKnown RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 LINC01560Q8TB33 94 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 ZC3HAV1LQ96H79 300 aaKnown RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 PRDM14Q9GZV8 571 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 FAM206AQ9NX38 181 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 UPB1Q9UBR1 384 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 MTFP1Q9UDX5 166 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 NOSIPQ9Y314 301 aaKnown RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 SETD2Q9BYW2 2564 aaPredicted RBP7.53□□□□□ -1.2
VPS4B-201ENST00000238497 C2CD3Q4AC94 2353 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 USF3Q68DE3 2245 aa7.53□□□□□ -1.2
VPS4B-201ENST00000238497 TUBAL3A6NHL2 446 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 C3orf80F5H4A9 247 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 L7N2F9 121 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 EIF1BO60739 113 aaKnown RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 RGS11O94810 467 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 TGM6O95932 706 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 HLA-HP01893 362 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 VSIG8P0DPA2 414 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 IL32P24001 234 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 CTSSP25774 331 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 NPY4RP50391 375 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 RAC1P63000 192 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 DYRK1AQ13627 763 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 C1QL2Q7Z5L3 287 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 SEH1LQ96EE3 360 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 TMEM59Q9BXS4 323 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 MRPL13Q9BYD1 178 aaKnown RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 ZNF436Q9C0F3 470 aaPredicted RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 ACTR6Q9GZN1 396 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 ARL6Q9H0F7 186 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 NIPAL2Q9H841 368 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 FBXO9Q9UK97 447 aaPredicted RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 CSPG4Q6UVK1 2322 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 TMEM82A0PJX8 343 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 IGF2P01344 180 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 CSF1P09603 554 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 VSIG10L2P0DP72 767 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 NTF4P34130 210 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 LHX2P50458 406 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 MMP16P51512 607 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 SORDQ00796 357 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 ZMYND11Q15326 602 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 RBMS2Q15434 407 aaKnown RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 SLC9A3R2Q15599 337 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 TAF9Q16594 264 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 C2orf68Q2NKX9 166 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 SNAI3Q3KNW1 292 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 ZNF295-AS1Q8N0V1 137 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 MUC20Q8N307 709 aaPredicted RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 RELL2Q8NC24 303 aaPredicted RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 HAVCR2Q8TDQ0 301 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 NEK7Q8TDX7 302 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 NRGNQ92686 78 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 RAB3CQ96E17 227 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 ZCCHC4Q9H5U6 513 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 SCP2D1Q9UJQ7 156 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 TLN2Q9Y4G6 2542 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 ZNF780AO75290 641 aaPredicted RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 AQP8O94778 261 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 HLA-AP01891 365 aaKnown RBP7.52□□□□□ -1.21
VPS4B-201ENST00000238497 SMUG1Q53HV7 270 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 COQ8AQ8NI60 647 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 FBXO17Q96EF6 278 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 GSKIPQ9P0R6 139 aa7.52□□□□□ -1.21
VPS4B-201ENST00000238497 SYNGR4O95473 234 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 DUSP1P28562 367 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 TIMP3P35625 211 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 ASCL1P50553 236 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 FOXG1P55316 489 aaPredicted RBP7.51□□□□□ -1.21
VPS4B-201ENST00000238497 GFRA1P56159 465 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 DLX5P56178 289 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 ACTBP60709 375 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 ACTG1P63261 375 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 GRK1Q15835 563 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 KIAA2026Q5HYC2 2103 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 SLC25A47Q6Q0C1 308 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 ALKAL2Q6UX46 152 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 CDH24Q86UP0 819 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 MED12LQ86YW9 2145 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 TUSC5Q8IXB3 177 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 DMRTC2Q8IXT2 367 aaPredicted RBP7.51□□□□□ -1.21
VPS4B-201ENST00000238497 ZNF100Q8IYN0 542 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 ZFAND1Q8TCF1 268 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 ARHGAP5-AS1Q96IT6 56 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 LURAP1Q96LR2 239 aa7.51□□□□□ -1.21
VPS4B-201ENST00000238497 SPOCK3Q9BQ16 436 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms