RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 UEVLDQ8IX04 471 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 OR52M1Q8NGK5 317 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 ZNF576Q9H609 170 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 RHOFQ9HBH0 211 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 IL36RNQ9UBH0 155 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 CHCHD2Q9Y6H1 151 aaPredicted RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 CNOT1A5YKK6 2376 aaKnown RBP9.34□□□□□ -0.92
USP28-201ENST00000003302 SCRG1O75711 98 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 FXYD4P59646 89 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 PHLDA2Q53GA4 152 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 HAGHLQ6PII5 290 aaPredicted RBP9.33□□□□□ -0.92
USP28-201ENST00000003302 OR2M3Q8NG83 312 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 NABP1Q96AH0 204 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 ZNF2Q9BSG1 426 aaPredicted RBP9.33□□□□□ -0.92
USP28-201ENST00000003302 RBM24Q9BX46 236 aaKnown RBP9.33□□□□□ -0.92
USP28-201ENST00000003302 PECRQ9BY49 303 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 DNTTIP1Q9H147 329 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 LSM5Q9Y4Y9 91 aaKnown RBP9.33□□□□□ -0.92
USP28-201ENST00000003302 CCDC187A0A096LP49 1063 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 ZNF98A6NK75 572 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 FIGNL2A6NMB9 653 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 HSPB2A8KAH6 182 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 ZNF587BE7ETH6 402 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 NME2P1O60361 137 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 IL32P24001 234 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 DCAF7P61962 342 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 DCDP81605 110 aaKnown RBP9.33□□□□□ -0.92
USP28-201ENST00000003302 HSPB2Q16082 182 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 LYZL2Q7Z4W2 148 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 PEG10Q86TG7 708 aaKnown RBP9.33□□□□□ -0.92
USP28-201ENST00000003302 EDAQ92838 391 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 ALKBH3Q96Q83 286 aaPredicted RBP9.33□□□□□ -0.92
USP28-201ENST00000003302 SLCO5A1Q9H2Y9 848 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 LPAR3Q9UBY5 353 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 FBXL17Q9UF56 701 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 KIAA1549Q9HCM3 1950 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 AKAP13Q12802 2813 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 BLACEA4D250 179 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 NUDT21O43809 227 aaKnown RBP9.33□□□□□ -0.92
USP28-201ENST00000003302 TOMM20Q15388 145 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 NTNG2Q96CW9 530 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 PIGLQ9Y2B2 252 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 B3GALT5Q9Y2C3 310 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 ROS1P08922 2347 aa9.33□□□□□ -0.92
USP28-201ENST00000003302 DUX1O43812 170 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 TMEM127O75204 238 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 MED6O75586 246 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 DKK1O94907 266 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 GLB1P16278 677 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 APOBEC1P41238 236 aaKnown RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 GPR85P60893 370 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 CCL7P80098 99 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 RHBDD2Q6NTF9 364 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 PLPP5Q8NEB5 264 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 AKR7LQ8NHP1 331 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 PTX4Q96A99 478 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 SULT4A1Q9BR01 284 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 RSRP1Q9BUV0 290 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 SRXN1Q9BYN0 137 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 PIGMQ9H3S5 423 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 P4HTMQ9NXG6 502 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 ALKBH4Q9NXW9 302 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 NXT1Q9UKK6 140 aaKnown RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 SFTA3P0C7M3 94 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 CCL2P13500 99 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 ZNF43P17038 809 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 NHLH2Q02577 135 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 PLXDC1Q8IUK5 500 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 TMEM156Q8N614 296 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 OR5H2Q8NGV7 314 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 DDIT4LQ96D03 193 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 UQCC2Q9BRT2 126 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 RCC2Q9P258 522 aaKnown RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 FAM230AA0A1W2PPH8 454 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 TPPPO94811 219 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 CSTBP04080 98 aaKnown RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 H2AFB1P0C5Y9 115 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 RFC3P40938 356 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 RPS18P62269 152 aaKnown RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 IAH1Q2TAA2 248 aaPredicted RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 ZNF385CQ66K41 422 aaPredicted RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 SLC16A13Q7RTY0 426 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 STOML3Q8TAV4 291 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 TMEM234Q8WY98 164 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 ST8SIA1Q92185 356 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 MVB12AQ96EY5 273 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 C12orf57Q99622 126 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 CRB3Q9BUF7 120 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 CADP27708 2225 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 GEMIN2O14893 280 aaKnown RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 IGHG1P01857 330 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 ARG1P05089 322 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 CCL4P13236 92 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 ZNF41P51814 821 aaPredicted RBP9.32□□□□□ -0.92
USP28-201ENST00000003302 TMEM33P57088 247 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 PDZK1IP1Q13113 114 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 HIST3H3Q16695 136 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 NSUN5P2Q63ZY6 315 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 ZIC4Q8N9L1 334 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 ADAMTS17Q8TE56 1095 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms