RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 DRAM2Q6UX65 266 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 ZNF730Q6ZMV8 503 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 TMPRSS11FQ6ZWK6 438 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 CPLX4Q7Z7G2 160 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 ZNF329Q86UD4 541 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 OSR2Q8N2R0 312 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 DPP10Q8N608 796 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 NDEL1Q9GZM8 345 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 YY1AP1Q9H869 796 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 INTS9Q9NV88 658 aaKnown RBP11.53□□□□□ -0.56
CLN3-249ENST00000636685 LRP12Q9Y561 859 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 DSCAML1Q8TD84 2053 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 PSMB11A5LHX3 300 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 PTP4A3O75365 173 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 TROVE2P10155 538 aaKnown RBP eCLIP11.52□□□□□ -0.57
CLN3-249ENST00000636685 GLRA1P23415 457 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 CD24P25063 80 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 IFNA8P32881 189 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 DYNC1I2Q13409 638 aaKnown RBP11.52□□□□□ -0.57
CLN3-249ENST00000636685 TRAM2Q15035 370 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 C9orf66Q5T8R8 295 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 MBOAT2Q6ZWT7 520 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 SLC16A9Q7RTY1 509 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 OFCC1Q8IZS5 231 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 CYB561A3Q8NBI2 242 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 KLHL30-AS1Q8NEE0 82 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 LZICQ8WZA0 190 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 SPSB4Q96A44 273 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 GPX7Q96SL4 187 aaPredicted RBP11.52□□□□□ -0.57
CLN3-249ENST00000636685 MICU1Q9BPX6 476 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 PAPOLGQ9BWT3 736 aaKnown RBP11.52□□□□□ -0.57
CLN3-249ENST00000636685 NSRP1Q9H0G5 558 aaKnown RBP11.52□□□□□ -0.57
CLN3-249ENST00000636685 CCDC134Q9H6E4 229 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 OPA3Q9H6K4 179 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 ZMAT4Q9H898 229 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 SP140LQ9H930 580 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 VNN3Q9NY84 501 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 SCOCQ9UIL1 159 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 ZNF256Q9Y2P7 627 aaPredicted RBP11.52□□□□□ -0.57
CLN3-249ENST00000636685 RHBDD3Q9Y3P4 386 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 SNX13Q9Y5W8 968 aa11.52□□□□□ -0.57
CLN3-249ENST00000636685 FFAR1O14842 300 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 TBX1O43435 398 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 XRCC2O43543 280 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 LY86O95711 162 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 TXNDC12O95881 172 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 HLA-DQA2P01906 255 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 GP2P55259 537 aaKnown RBP11.51□□□□□ -0.57
CLN3-249ENST00000636685 DLX6P56179 175 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 FXYD6P3P58550 94 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 CYBRD1Q53TN4 286 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 C9orf152Q5JTZ5 239 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 ZNF770Q6IQ21 691 aaPredicted RBP11.51□□□□□ -0.57
CLN3-249ENST00000636685 C16orf82Q7Z2V1 217 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 RNF113BQ8IZP6 322 aaKnown RBP11.51□□□□□ -0.57
CLN3-249ENST00000636685 OR13D1Q8NGV5 346 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 OR2T27Q8NH04 317 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 ISOC1Q96CN7 298 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 SDSLQ96GA7 329 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 FAM46AQ96IP4 442 aaKnown RBP11.51□□□□□ -0.57
CLN3-249ENST00000636685 RAX2Q96IS3 184 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 TPD52L3Q96J77 140 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 FNDC11Q9BVV2 318 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 FGF23Q9GZV9 251 aaPredicted RBP11.51□□□□□ -0.57
CLN3-249ENST00000636685 LIN7BQ9HAP6 207 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 EDA2RQ9HAV5 297 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 MRPL22Q9NWU5 206 aaKnown RBP11.51□□□□□ -0.57
CLN3-249ENST00000636685 SIGLEC7Q9Y286 467 aa11.51□□□□□ -0.57
CLN3-249ENST00000636685 RRP15Q9Y3B9 282 aaKnown RBP11.51□□□□□ -0.57
CLN3-249ENST00000636685 H3BUI4 141 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 AMY1AP04745 511 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 AMY2AP04746 511 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 PSKH1P11801 424 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 SLC7A2P52569 658 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 KLHL12Q53G59 568 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 KCTD8Q6ZWB6 473 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 OR11H6Q8NGC7 330 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 CAPSLQ8WWF8 208 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 SGK3Q96BR1 496 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 NMNAT3Q96T66 252 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 EBF4Q9BQW3 602 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 SLC25A33Q9BSK2 321 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 COPS4Q9BT78 406 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 RTL8AQ9BWD3 113 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 FN3KQ9H479 309 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 RPRD1BQ9NQG5 326 aaKnown RBP11.5□□□□□ -0.57
CLN3-249ENST00000636685 KIAA1109Q2LD37 5005 aa11.5□□□□□ -0.57
CLN3-249ENST00000636685 MEX3AA1L020 520 aaKnown RBP11.49□□□□□ -0.57
CLN3-249ENST00000636685 ANXA2P2A6NMY6 339 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 C17orf98A8MV24 154 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 SEC14L6B5MCN3 397 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 CCL24O00175 119 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 PGA5P0DJD9 388 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 PIPP12273 146 aaPredicted RBP11.49□□□□□ -0.57
CLN3-249ENST00000636685 NOS3P29474 1203 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 RPS6KA3P51812 740 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 SEC23BQ15437 767 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 TIGD6Q17RP2 521 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 LRRC23Q53EV4 343 aaPredicted RBP11.49□□□□□ -0.57
CLN3-249ENST00000636685 DPY19L2P2Q6ZN68 376 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms