RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FAM231CP0DMU5 169 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 GABRG2P18507 467 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 GZMHP20718 246 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 OTX1P32242 354 aaPredicted RBP0.61□□□□□ -2.31
SCN1A-208ENST00000625916 TAGLN2P37802 199 aaKnown RBP0.61□□□□□ -2.31
SCN1A-208ENST00000625916 RFC3P40938 356 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 TUFMP49411 452 aaKnown RBP0.61□□□□□ -2.31
SCN1A-208ENST00000625916 SERPINB8P50452 374 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 TFDP2Q14188 446 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 HSDL1Q3SXM5 330 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 CCDC183Q5T5S1 534 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 RWDD4Q6NW29 188 aaKnown RBP0.61□□□□□ -2.31
SCN1A-208ENST00000625916 WDR82Q6UXN9 313 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 ZYG11AQ6WRX3 759 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 TMEM144Q7Z5S9 345 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 VKORC1L1Q8N0U8 176 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 OR5AR1Q8NGP9 310 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 AKR7LQ8NHP1 331 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 ASZ1Q8WWH4 475 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 GSDMAQ96QA5 445 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 NUP58Q9BVL2 599 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 UCK2Q9BZX2 261 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 CYP3A43Q9HB55 503 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 FANCEQ9HB96 536 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 FAM60AQ9NP50 221 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 HEBP1Q9NRV9 189 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 PTTG3PQ9NZH4 202 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 EXTL2Q9UBQ6 330 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 DDX19BQ9UMR2 479 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 ICOSQ9Y6W8 199 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 BRD4O60885 1362 aaPredicted RBP0.6□□□□□ -2.31
SCN1A-208ENST00000625916 LTBP2Q14767 1821 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 TRGV4A0A0C4DH28 118 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 CPLX1O14810 134 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 SLC31A1O15431 190 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 CIB2O75838 187 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 CXorf1O96002 111 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 SEC11BP0C7V7 166 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 UQCRFS1P47985 274 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 INCA1Q0VD86 236 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 ADIGQ0VDE8 80 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 OR1Q1Q15612 314 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 TRMT5Q32P41 509 aaKnown RBP0.6□□□□□ -2.31
SCN1A-208ENST00000625916 KDM4DQ6B0I6 523 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 OR2T5Q6IEZ7 315 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 ZNF322Q6U7Q0 402 aaPredicted RBP0.6□□□□□ -2.31
SCN1A-208ENST00000625916 COMTD1Q86VU5 262 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 UNC93AQ86WB7 457 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 RAB43Q86YS6 212 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 SLC22A9Q8IVM8 553 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 ITPRIPQ8IWB1 547 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 GPATCH11Q8N954 259 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 WDR31Q8NA23 367 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 OR2T29Q8NH02 315 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 ISG20Q96AZ6 181 aaKnown RBP0.6□□□□□ -2.31
SCN1A-208ENST00000625916 RDH12Q96NR8 316 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 ANKRA2Q9H9E1 313 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 SND1-IT1Q9HBX3 110 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 TREX1Q9NSU2 369 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 RCL1Q9Y2P8 373 aaKnown RBP0.6□□□□□ -2.31
SCN1A-208ENST00000625916 ASB3Q9Y575 518 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 SAR1BQ9Y6B6 198 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 ELP1O95163 1332 aa0.6□□□□□ -2.31
SCN1A-208ENST00000625916 JCADQ9P266 1359 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 IGHV6-1A0A0B4J1U7 121 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 RGS5O15539 181 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 CTNSO60931 367 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 CDK1P06493 297 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 CXCR1P25024 350 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 SLC6A1P30531 599 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 CCL23P55773 120 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 RGS8P57771 180 aaPredicted RBP0.59□□□□□ -2.31
SCN1A-208ENST00000625916 OR2B8PP59922 312 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 RPS15AP62244 130 aaKnown RBP0.59□□□□□ -2.31
SCN1A-208ENST00000625916 GRB2P62993 217 aaKnown RBP0.59□□□□□ -2.31
SCN1A-208ENST00000625916 ZNF33AQ06730 810 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 PRAMEF20Q5VT98 475 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 STEAP4Q687X5 459 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 Q6ZQT7 251 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 RPRMLQ8N4K4 120 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 JAGN1Q8N5M9 183 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 OR2M7Q8NG81 312 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 OR4C5Q8NGB2 326 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 OR4K13Q8NH42 304 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 FAM57AQ8TBR7 257 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 RXFP2Q8WXD0 754 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 C8orf44Q96CB5 159 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 RCN3Q96D15 328 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 RASD2Q96D21 266 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 FXYD5Q96DB9 178 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 TRIB3Q96RU7 358 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 NAPGQ99747 312 aaPredicted RBP0.59□□□□□ -2.31
SCN1A-208ENST00000625916 SLC7A5P2Q9GIP4 190 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 RDH14Q9HBH5 336 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 ABCB9Q9NP78 766 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 MRPL16Q9NX20 251 aaKnown RBP0.59□□□□□ -2.31
SCN1A-208ENST00000625916 LYARQ9NX58 379 aaKnown RBP0.59□□□□□ -2.31
SCN1A-208ENST00000625916 NDRG2Q9UN36 371 aaKnown RBP0.59□□□□□ -2.31
SCN1A-208ENST00000625916 ZNF257Q9Y2Q1 563 aa0.59□□□□□ -2.31
SCN1A-208ENST00000625916 ENPP4Q9Y6X5 453 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms