RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TGP01266 2768 aa15.71■□□□□ 0.11
CDX1-202ENST00000616154 FAM181BA6NEQ2 426 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 SLC22A31A6NKX4 558 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 ZNF879B4DU55 563 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 LIPFP07098 398 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 ANXA2P07355 339 aaKnown RBP15.7■□□□□ 0.1
CDX1-202ENST00000616154 H2BFMP0C1H6 154 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 MMP9P14780 707 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 NAA10P41227 235 aaPredicted RBP15.7■□□□□ 0.1
CDX1-202ENST00000616154 HOXA4Q00056 320 aaPredicted RBP15.7■□□□□ 0.1
CDX1-202ENST00000616154 ROM1Q03395 351 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 APOFQ13790 326 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 SMN1Q16637 294 aaKnown RBP15.7■□□□□ 0.1
CDX1-202ENST00000616154 KRT74Q7RTS7 529 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 TMEM86BQ8N661 226 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 ITFG2Q969R8 447 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 REEP6Q96HR9 211 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 PCGF1Q9BSM1 259 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 OR10A2Q9H208 303 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 WNK1Q9H4A3 2382 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 TRIM36Q9NQ86 728 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 WARS2Q9UGM6 360 aaKnown RBP15.7■□□□□ 0.1
CDX1-202ENST00000616154 ZNF391Q9UJN7 358 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.7■□□□□ 0.1
CDX1-202ENST00000616154 VWFP04275 2813 aa15.7■□□□□ 0.1
CDX1-202ENST00000616154 TNFRSF13BO14836 293 aaPredicted RBP15.69■□□□□ 0.1
CDX1-202ENST00000616154 SFTPBP07988 381 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 CCDC159P0C7I6 412 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 DCTDP32321 178 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 CSNK2BP67870 215 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 MZT1Q08AG7 82 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 TIGD6Q17RP2 521 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 LCN1P1Q5VSP4 162 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 RUSC1-AS1Q66K80 236 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 SFRP4Q6FHJ7 346 aaPredicted RBP15.69■□□□□ 0.1
CDX1-202ENST00000616154 FAM57BQ71RH2 274 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 OR4F5Q8NH21 305 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 WFDC12Q8WWY7 111 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 FAM71F1Q96KD3 344 aaPredicted RBP15.69■□□□□ 0.1
CDX1-202ENST00000616154 TBX15Q96SF7 602 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 BEX1Q9HBH7 125 aa15.69■□□□□ 0.1
CDX1-202ENST00000616154 OOEPA6NGQ2 149 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 ACOD1A6NK06 481 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 SNTNA6NMZ2 147 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 C3orf80F5H4A9 247 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 TBX1O43435 398 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 ADAM20O43506 726 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 NDUFA2O43678 99 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 TOX4O94842 621 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 NDUFA7O95182 113 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 MELTFP08582 738 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 DBTP11182 482 aaKnown RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 GSK3AP49840 483 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 RAG2P55895 527 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 RPS7P62081 194 aaKnown RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 ZNF91Q05481 1191 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 FIP1L1Q6UN15 594 aaKnown RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 BOLLQ8N9W6 283 aaKnown RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 CSNK2A3Q8NEV1 391 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 THEM6Q8WUY1 208 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 YTHDF1Q9BYJ9 559 aaKnown RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 CHIAQ9BZP6 476 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 FKBP14Q9NWM8 211 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 C14orf119Q9NWQ9 140 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 H2AFY2Q9P0M6 372 aaPredicted RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 LAMP5Q9UJQ1 280 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 LRP12Q9Y561 859 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 POMT1Q9Y6A1 747 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 NOTCH1P46531 2555 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 TRAV38-1A0A0B4J264 116 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 CENPVL3A0A0U1RRI6 287 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 ANKRD30BLA7E2S9 258 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 J3QRE1 110 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 SLC1A7O00341 560 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 KNG1P01042 644 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 CRYBA1P05813 215 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 DEFA6Q01524 100 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 PDLIM3Q53GG5 364 aaPredicted RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 PNLDC1Q8NA58 520 aaKnown RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 PGAM5Q96HS1 289 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 WDFY2Q96P53 400 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 SMURF1Q9HCE7 757 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 TNFRSF19Q9NS68 423 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 C1orf123Q9NWV4 160 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 C1RLQ9NZP8 487 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 PSORS1C1Q9UIG5 152 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 RPL36Q9Y3U8 105 aaKnown RBP15.68■□□□□ 0.1
CDX1-202ENST00000616154 TMEM14AQ9Y6G1 99 aa15.68■□□□□ 0.1
CDX1-202ENST00000616154 ZNF254O75437 659 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 LHBP01229 141 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 IGLV3-1P01715 115 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 PIPP12273 146 aaPredicted RBP15.67■□□□□ 0.1
CDX1-202ENST00000616154 CRHBPP24387 322 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 RELBQ01201 579 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 PDCD1Q15116 288 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 C11orf91Q3C1V1 193 aa15.67■□□□□ 0.1
CDX1-202ENST00000616154 RBM48Q5RL73 367 aaKnown RBP15.67■□□□□ 0.1
CDX1-202ENST00000616154 METTL11BQ5VVY1 283 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms