RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SLC38A9Q8NBW4 561 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 METTL9Q9H1A3 318 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 IGKV1D-43A0A0B4J1Z2 117 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 C7orf77A4D0Y5 90 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 S100A8P05109 93 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 ZNF735P0CB33 412 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 MMP16P51512 607 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 RPS18P62269 152 aaKnown RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 TEX30Q5JUR7 227 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 GGNBP1Q5YKI7 109 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 DEGS2Q6QHC5 323 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 PLXDC2Q6UX71 529 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 ZFP62Q8NB50 900 aaPredicted RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 OR2G3Q8NGZ4 309 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 OR1L3Q8NH93 324 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 ASB10Q8WXI3 467 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 HDHD3Q9BSH5 251 aaPredicted RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 LPAR5Q9H1C0 372 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 C5orf66Q9H5L9 145 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 C8orf33Q9H7E9 229 aaPredicted RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 A0A1W2PPC4 97 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 TP53I11O14683 189 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 ST8SIA3O43173 380 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 DXOO77932 396 aaKnown RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 DDAH2O95865 285 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 LINC00271P0C7V0 271 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 FOLR1P15328 257 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 C1orf100Q5SVJ3 147 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 OR5T1Q8NG75 326 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 RNF133Q8WVZ7 376 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 MRPL24Q96A35 216 aaKnown RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 SGK3Q96BR1 496 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 FAAP24Q9BTP7 215 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 LMAN1LQ9HAT1 526 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 G6PC2Q9NQR9 355 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 A0A1B0GTI1 187 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 FSTP19883 344 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 MECP2P51608 486 aaKnown RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 NKX6-1P78426 367 aaPredicted RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 HMGN3Q15651 99 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 RSPO4Q2I0M5 234 aaPredicted RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 FBXO46Q6PJ61 603 aaPredicted RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 RBMS3Q6XE24 437 aaKnown RBP11.16□□□□□ -0.62
LIG1-221ENST00000613670 HOGA1Q86XE5 327 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 MISPQ8IVT2 679 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 CRISPLD2Q9H0B8 497 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 NELFAQ9H3P2 528 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 ALKBH4Q9NXW9 302 aa11.16□□□□□ -0.62
LIG1-221ENST00000613670 KIAA1671Q9BY89 1806 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 A0A1W2PPE2 198 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 EIF3GO75821 320 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIG1-221ENST00000613670 SLC22A25Q6T423 547 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 ARHGEF39Q8N4T4 335 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 ST8SIA1Q92185 356 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 MIOXQ9UGB7 285 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 COL4A3Q01955 1670 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 H0YIZ8 118 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 C9orf135Q5VTT2 229 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 HIST2H3AQ71DI3 136 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 PRR18Q8N4B5 295 aa11.15□□□□□ -0.62
LIG1-221ENST00000613670 LILRB1Q8NHL6 650 aaPredicted RBP11.15□□□□□ -0.62
LIG1-221ENST00000613670 SAT2Q96F10 170 aaPredicted RBP11.15□□□□□ -0.62
LIG1-221ENST00000613670 GAS2L1Q99501 681 aaPredicted RBP11.15□□□□□ -0.62
LIG1-221ENST00000613670 MKI67P46013 3256 aaKnown RBP11.15□□□□□ -0.62
LIG1-221ENST00000613670 ABCA7Q8IZY2 2146 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 ADAM10O14672 748 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 OR2J2O76002 312 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 ZFAND5O76080 213 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 SKA3Q8IX90 412 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 CCDC71LQ8N9Z2 235 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 ZNF784Q8NCA9 323 aaPredicted RBP11.15□□□□□ -0.63
LIG1-221ENST00000613670 OR2AE1Q8NHA4 323 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 ZNF519Q8TB69 540 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 ZNF721Q8TF20 911 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 GPR132Q9UNW8 380 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 LHX6Q9UPM6 363 aa11.15□□□□□ -0.63
LIG1-221ENST00000613670 PHF3Q92576 2039 aaKnown RBP11.14□□□□□ -0.63
LIG1-221ENST00000613670 GPR37O15354 613 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 S100PP25815 95 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 DEFA6Q01524 100 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 MALLQ13021 153 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 SHHQ15465 462 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 C4orf17Q53FE4 359 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 FDX2Q6P4F2 183 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 ZNF813Q6ZN06 617 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 GJC3Q8NFK1 279 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 OR13G1Q8NGZ3 307 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 SCGB1C1Q8TD33 95 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 SP7Q8TDD2 431 aaPredicted RBP11.14□□□□□ -0.63
LIG1-221ENST00000613670 HIST1H2AAQ96QV6 131 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 CDCA3Q99618 268 aaPredicted RBP11.14□□□□□ -0.63
LIG1-221ENST00000613670 UNKLQ9H9P5 680 aaKnown RBP11.14□□□□□ -0.63
LIG1-221ENST00000613670 ZNF107Q9UII5 783 aaPredicted RBP11.14□□□□□ -0.63
LIG1-221ENST00000613670 E5RGE8 158 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 CST7O76096 145 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 CNOT4O95628 575 aaKnown RBP11.14□□□□□ -0.63
LIG1-221ENST00000613670 IFNA5P01569 189 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 OR6C1Q96RD1 312 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 PRRG4Q9BZD6 226 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 ZNF286AQ9HBT8 521 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms