RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CLVS2Q5SYC1 327 aa17.15■□□□□ 0.34
CLIP3-206ENST00000593074 FAHD2BQ6P2I3 314 aaPredicted RBP17.15■□□□□ 0.34
CLIP3-206ENST00000593074 C11orf88Q6PI97 169 aa17.15■□□□□ 0.34
CLIP3-206ENST00000593074 FAHD2AQ96GK7 314 aa17.15■□□□□ 0.34
CLIP3-206ENST00000593074 DPCDQ9BVM2 203 aaPredicted RBP17.15■□□□□ 0.34
CLIP3-206ENST00000593074 RGCCQ9H4X1 137 aa17.15■□□□□ 0.34
CLIP3-206ENST00000593074 RTTNQ86VV8 2226 aa17.14■□□□□ 0.34
CLIP3-206ENST00000593074 HMSDA8MTL9 139 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 SYNGR4O95473 234 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 SERPINA2P20848 420 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 CBX5P45973 191 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 SOX8P57073 446 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 MICBQ29980 383 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 LY6G6FQ5SQ64 297 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 VAX1Q5SQQ9 334 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 ASCL3Q9NQ33 180 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 GPR173Q9NS66 373 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 MCRIP1C9JLW8 97 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 M0R233 179 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 FARS2O95363 451 aaKnown RBP17.14■□□□□ 0.33
CLIP3-206ENST00000593074 IL2RAP01589 272 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 PMP2P02689 132 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 IFNA6P05013 189 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 ZBTB25P24278 435 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 TMEM42Q69YG0 159 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 ZNF100Q8IYN0 542 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 OR10K1Q8NGX5 313 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 ST8SIA4Q92187 359 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 S100A13Q99584 98 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 ATPIF1Q9UII2 106 aa17.14■□□□□ 0.33
CLIP3-206ENST00000593074 IFNA7P01567 189 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 HLA-AP01891 365 aaKnown RBP17.13■□□□□ 0.33
CLIP3-206ENST00000593074 CPT2P23786 658 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 SEC61A1P61619 476 aaKnown RBP17.13■□□□□ 0.33
CLIP3-206ENST00000593074 ARG2P78540 354 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 CNN3Q15417 329 aaKnown RBP17.13■□□□□ 0.33
CLIP3-206ENST00000593074 LYG2Q86SG7 212 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 VASH2Q86V25 355 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 HOGA1Q86XE5 327 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 ARRDC1Q8N5I2 433 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 FBXW5Q969U6 566 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 CPNE2Q96FN4 548 aaPredicted RBP17.13■□□□□ 0.33
CLIP3-206ENST00000593074 CYYR1Q96J86 154 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 FN3KRPQ9HA64 309 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 SLC7A10Q9NS82 523 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 PARPBPQ9NWS1 579 aa17.13■□□□□ 0.33
CLIP3-206ENST00000593074 hCG_38984A0A1B0GV85 526 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 SERPINE3A8MV23 424 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 RPL36A-HNRNPH2H7BZ11 118 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 L7N2F9 121 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 IGHV3-9P01782 118 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 LIPCP11150 499 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 EXOSC2Q13868 293 aaKnown RBP17.12■□□□□ 0.33
CLIP3-206ENST00000593074 SLC10A1Q14973 349 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 OPCMLQ14982 345 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 LPCAT3Q6P1A2 487 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.12■□□□□ 0.33
CLIP3-206ENST00000593074 ZFP62Q8NB50 900 aaPredicted RBP17.12■□□□□ 0.33
CLIP3-206ENST00000593074 PRSS33Q8NF86 280 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 OR5M8Q8NGP6 311 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 BCO1Q9HAY6 547 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 FAM86C1Q9NVL1 165 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 MCTS1Q9ULC4 181 aaKnown RBP17.12■□□□□ 0.33
CLIP3-206ENST00000593074 MED13Q9UHV7 2174 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 LOC100509620A0A075B734 347 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 OR6C65A6NJZ3 312 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 NKX2-8O15522 239 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 CA11O75493 328 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 PRKACBP22694 351 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 CD34P28906 385 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 BLVRBP30043 206 aaPredicted RBP17.12■□□□□ 0.33
CLIP3-206ENST00000593074 MTCP1P56278 107 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 SRSF4Q08170 494 aaKnown RBP17.12■□□□□ 0.33
CLIP3-206ENST00000593074 PPP1R1AQ13522 171 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 ARL6IP1Q15041 203 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 PECRQ9BY49 303 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 RNF122Q9H9V4 155 aa17.12■□□□□ 0.33
CLIP3-206ENST00000593074 EP300Q09472 2414 aaPredicted RBP17.11■□□□□ 0.33
CLIP3-206ENST00000593074 CEACAM18A8MTB9 384 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 ZNF724A8MTY0 619 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 ZNF24P17028 368 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 ARFRP1Q13795 201 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 OR8B8Q15620 311 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 PABPC1L2AQ5JQF8 200 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 PLXDC2Q6UX71 529 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 TUSC5Q8IXB3 177 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 FNDC9Q8TBE3 224 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 Q96M66 194 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 PRRG4Q9BZD6 226 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 ZNF552Q9H707 407 aaPredicted RBP17.11■□□□□ 0.33
CLIP3-206ENST00000593074 ACKR4Q9NPB9 350 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 MYO7BQ6PIF6 2116 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 CD8AP01732 235 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 FAM3AP98173 230 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 ZNF766Q5HY98 468 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 TERB2Q8NHR7 220 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 MITD1Q8WV92 249 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 C1QTNF5Q9BXJ0 243 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 PRDM14Q9GZV8 571 aa17.11■□□□□ 0.33
CLIP3-206ENST00000593074 NOP16Q9Y3C1 178 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms