RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PLCXD3Q63HM9 321 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 TMEM42Q69YG0 159 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 DCDC5Q6ZRR9 648 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 ZNF826PQ6ZT77 177 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 KCTD8Q6ZWB6 473 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 NLRC3Q7RTR2 1065 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 C11orf53Q8IXP5 236 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 OR5A2Q8NGI9 324 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 FBLIM1Q8WUP2 373 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 C10orf35Q96D05 121 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 POM121Q96HA1 1249 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 TMEM246Q9BRR3 403 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 ZNF649Q9BS31 505 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 SHARPINQ9H0F6 387 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 RASSF4Q9H2L5 321 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 PLEKHA1Q9HB21 404 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 HIF1ANQ9NWT6 349 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 FRRS1LQ9P0K9 344 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 MIOXQ9UGB7 285 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 LRCH1Q9Y2L9 728 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 TRAV38-1A0A0B4J264 116 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 PPIAL4CA0A0B4J2A2 164 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 LOC107986453A0A1B0GWG9 222 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 EFCAB10A6NFE3 127 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 OOEPA6NGQ2 149 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 ZNF732B4DXR9 585 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 LGALS8O00214 317 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 CDIPTO14735 213 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 NDUFA2O43678 99 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 RPSAP08865 295 aaKnown RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 LIMS3P0CW19 117 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 LIMS4P0CW20 117 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 PIPP12273 146 aaPredicted RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 RPS2P15880 293 aaKnown RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 MYL12AP19105 171 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 GATA3P23771 443 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 AQP4P55087 323 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 NANOS3P60323 173 aaKnown RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 RIPK1Q13546 671 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 CR1LQ2VPA4 569 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 ESCO2Q56NI9 601 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 FAM201AQ5SY85 155 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 FAM120AOSQ5T036 256 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 WDR82Q6UXN9 313 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 MOB3CQ70IA8 216 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 GCSAMQ8N6F7 178 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 BOLLQ8N9W6 283 aaKnown RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 SCCPDHQ8NBX0 429 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 OR10Z1Q8NGY1 313 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 LRRC29Q8WV35 223 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 TECTBQ96PL2 329 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 BEX2Q9BXY8 128 aa9.96□□□□□ -0.82
LIG3-213ENST00000590630 FGF23Q9GZV9 251 aaPredicted RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 ISG20L2Q9H9L3 353 aaKnown RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 CNOT2Q9NZN8 540 aaKnown RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 DIMT1Q9UNQ2 313 aaKnown RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 POLR3KQ9Y2Y1 108 aaPredicted RBP9.96□□□□□ -0.82
LIG3-213ENST00000590630 CUBNO60494 3623 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 A0A0G2JMP0 313 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 A0A0X1KG70 313 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 ANKRD61A6NGH8 418 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 A8MXK9 166 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 SRRM5B3KS81 715 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 C3orf80F5H4A9 247 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 WNT2P09544 360 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 MUC1P15941 1255 aaPredicted RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 GBX2P52951 348 aaPredicted RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 LCN2P80188 198 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 MED21Q13503 144 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 ALKBH1Q13686 389 aaKnown RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 MICBQ29980 383 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 TEX36Q5VZQ5 186 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 SFRP4Q6FHJ7 346 aaPredicted RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 TMPRSS11AQ6ZMR5 421 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 RDH10Q8IZV5 341 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 C19orf18Q8NEA5 215 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 DEFB108BQ8NET1 73 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 OR4M2Q8NGB6 313 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 OR8B3Q8NGG8 313 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 PP6455Q8WZ26 134 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 RPL3LQ92901 407 aaKnown RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 C12orf43Q96C57 262 aaKnown RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 NEIL1Q96FI4 390 aaPredicted RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 TMEM80Q96HE8 168 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 OR8B2Q96RD0 313 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 SSBP3Q9BWW4 388 aaPredicted RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 CHST5Q9GZS9 411 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 OR51I2Q9H344 312 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 METTL17Q9H7H0 456 aaPredicted RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 PLCXD1Q9NUJ7 323 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 HHLA2Q9UM44 414 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 CAB39Q9Y376 341 aaPredicted RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 EXOSC1Q9Y3B2 195 aaKnown RBP9.95□□□□□ -0.82
LIG3-213ENST00000590630 ATRQ13535 2644 aa9.95□□□□□ -0.82
LIG3-213ENST00000590630 A6NIN4 97 aa9.94□□□□□ -0.82
LIG3-213ENST00000590630 TMEM212A6NML5 194 aa9.94□□□□□ -0.82
LIG3-213ENST00000590630 OR4C45A6NMZ5 311 aa9.94□□□□□ -0.82
LIG3-213ENST00000590630 J3QLI3 93 aa9.94□□□□□ -0.82
LIG3-213ENST00000590630 GATBO75879 557 aaKnown RBP9.94□□□□□ -0.82
LIG3-213ENST00000590630 ATP6V1G2O95670 118 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms