RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	TRAV38-1	A0A0B4J264	116 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	OR5B21	A6NL26	309 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	SRRM5	B3KS81	715 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	CDIPT	O14735	213 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	CLIC3	O95833	236 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	NRAS	P01111	189 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	ISG15	P05161	165 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	UBC	P0CG48	685 aa	Known RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	RPS2	P15880	293 aa	Known RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	EGR1	P18146	543 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	SRD5A1	P18405	259 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	CCR9	P51686	369 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	GNG3	P63215	75 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	HOXA4	Q00056	320 aa	Predicted RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	PAX2	Q02962	417 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	SLC34A1	Q06495	639 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	SMN1	Q16637	294 aa	Known RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	CLVS2	Q5SYC1	327 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	ZNF841	Q6ZN19	808 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	IL17REL	Q6ZVW7	336 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	NLRC3	Q7RTR2	1065 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	SCCPDH	Q8NBX0	429 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	OR52I1	Q8NGK6	324 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	DACT3	Q96B18	629 aa	Predicted RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	PELI1	Q96FA3	418 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	ADI1	Q9BV57	179 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	TMPRSS13	Q9BYE2	586 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	OR51I2	Q9H344	312 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	METTL17	Q9H7H0	456 aa	Predicted RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	FGF20	Q9NP95	211 aa	Predicted RBP	13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	ERVK13-1	Q9NX77	482 aa		13.57	□□□□□ -0.24
ERBB2-222	ENST00000584908	COL6A5	A8TX70	2615 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908		A0A1B0GVI7	797 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	hCG_1807616	A0A1W2PRN6	198 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	MUC1	P15941	1255 aa	Predicted RBP	13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	CD80	P33681	288 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	CAPG	P40121	348 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	GPM6A	P51674	278 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	NANOS3	P60323	173 aa	Known RBP	13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	CEP78	Q5JTW2	689 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	DCAF12L2	Q5VW00	463 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	FAHD2B	Q6P2I3	314 aa	Predicted RBP	13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	LYPD2	Q6UXB3	125 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	C1orf229	Q6ZS94	237 aa	Predicted RBP	13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	LHFPL3	Q86UP9	236 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	FAM90A1	Q86YD7	464 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	TEX29	Q8N6K0	151 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	C19orf18	Q8NEA5	215 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	OR8B3	Q8NGG8	313 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	CNIH3	Q8TBE1	160 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	LRRC29	Q8WV35	223 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	C12orf43	Q96C57	262 aa	Known RBP	13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	C10orf35	Q96D05	121 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	FAHD2A	Q96GK7	314 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	C4orf36	Q96KX1	117 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	OR8B2	Q96RD0	313 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	ALG8	Q9BVK2	526 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	SSBP3	Q9BWW4	388 aa	Predicted RBP	13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	FRRS1L	Q9P0K9	344 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	KAAG1	Q9UBP8	84 aa		13.56	□□□□□ -0.24
ERBB2-222	ENST00000584908	LOC107986453	A0A1B0GWG9	222 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	ERICH4	A6NGS2	130 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	ZNF732	B4DXR9	585 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	C3orf80	F5H4A9	247 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908		H0YJX3	145 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	TRAPPC2L	H3BP13	241 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	SYT7	O43581	403 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	AVP	P01185	164 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	IFNA2	P01563	188 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	LIMS3	P0CW19	117 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	LIMS4	P0CW20	117 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	ZNF12	P17014	697 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	PITPNB	P48739	271 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	NPY4R	P50391	375 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	MRPL28	Q13084	256 aa	Known RBP	13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	TMEM244	Q5VVB8	128 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	SFRP4	Q6FHJ7	346 aa	Predicted RBP	13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	MOB3C	Q70IA8	216 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	DEFB108B	Q8NET1	73 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	HAVCR2	Q8TDQ0	301 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	FBLIM1	Q8WUP2	373 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	RPL3L	Q92901	407 aa	Known RBP	13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	VCX	Q9H320	206 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	MMP26	Q9NRE1	261 aa		13.55	□□□□□ -0.24
ERBB2-222	ENST00000584908	OR4C45	A6NMZ5	311 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908		J3QLW9	94 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	PHF1	O43189	567 aa	Predicted RBP	13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	HTR1A	P08908	422 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	GNAO1	P09471	354 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	ZNF19	P17023	458 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	DCK	P27707	260 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	GNB2	P62879	340 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	MICB	Q29980	383 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	ODF4	Q2M2E3	257 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	C11orf91	Q3C1V1	193 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	PLCXD3	Q63HM9	321 aa		13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	WDR25	Q64LD2	544 aa	Predicted RBP	13.54	□□□□□ -0.24
ERBB2-222	ENST00000584908	KCTD8	Q6ZWB6	473 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms