RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CD83Q01151 205 aa8.83□□□□□ -1
SS18-221ENST00000582448 GALK2Q01415 458 aa8.83□□□□□ -1
SS18-221ENST00000582448 MFGE8Q08431 387 aaPredicted RBP8.83□□□□□ -1
SS18-221ENST00000582448 ENDOGQ14249 297 aaKnown RBP8.83□□□□□ -1
SS18-221ENST00000582448 RAB35Q15286 201 aa8.83□□□□□ -1
SS18-221ENST00000582448 SLC36A2Q495M3 483 aa8.83□□□□□ -1
SS18-221ENST00000582448 METAP1DQ6UB28 335 aaPredicted RBP8.83□□□□□ -1
SS18-221ENST00000582448 ZNF813Q6ZN06 617 aa8.83□□□□□ -1
SS18-221ENST00000582448 DPPA2Q7Z7J5 298 aa8.83□□□□□ -1
SS18-221ENST00000582448 LAX1Q8IWV1 398 aa8.83□□□□□ -1
SS18-221ENST00000582448 ELMOD2Q8IZ81 293 aa8.83□□□□□ -1
SS18-221ENST00000582448 PARP16Q8N5Y8 322 aa8.83□□□□□ -1
SS18-221ENST00000582448 CCDC54Q8NEL0 328 aa8.83□□□□□ -1
SS18-221ENST00000582448 IL17RDQ8NFM7 739 aa8.83□□□□□ -1
SS18-221ENST00000582448 RGP1Q92546 391 aaPredicted RBP8.83□□□□□ -1
SS18-221ENST00000582448 NABP1Q96AH0 204 aa8.83□□□□□ -1
SS18-221ENST00000582448 PGAM5Q96HS1 289 aa8.83□□□□□ -1
SS18-221ENST00000582448 GMPPAQ96IJ6 420 aaPredicted RBP8.83□□□□□ -1
SS18-221ENST00000582448 WWC2-AS2Q96NR7 200 aa8.83□□□□□ -1
SS18-221ENST00000582448 CCDC32Q9BV29 185 aa8.83□□□□□ -1
SS18-221ENST00000582448 RNF121Q9H920 327 aa8.83□□□□□ -1
SS18-221ENST00000582448 PLEKHA1Q9HB21 404 aa8.83□□□□□ -1
SS18-221ENST00000582448 DDX28Q9NUL7 540 aaKnown RBP8.83□□□□□ -1
SS18-221ENST00000582448 FAM206AQ9NX38 181 aa8.83□□□□□ -1
SS18-221ENST00000582448 NUFIP1Q9UHK0 495 aaKnown RBP8.83□□□□□ -1
SS18-221ENST00000582448 FBXL3Q9UKT7 428 aa8.83□□□□□ -1
SS18-221ENST00000582448 PROCRQ9UNN8 238 aa8.83□□□□□ -1
SS18-221ENST00000582448 LAMP3Q9UQV4 416 aa8.83□□□□□ -1
SS18-221ENST00000582448 SLC22A13Q9Y226 551 aa8.83□□□□□ -1
SS18-221ENST00000582448 AK6Q9Y3D8 172 aaKnown RBP8.83□□□□□ -1
SS18-221ENST00000582448 N6AMT1Q9Y5N5 214 aa8.83□□□□□ -1
SS18-221ENST00000582448 V9GY05 133 aa8.83□□□□□ -1
SS18-221ENST00000582448 PCNX3Q9H6A9 2034 aa8.82□□□□□ -1
SS18-221ENST00000582448 TRBV5-7A0A0A0MS05 114 aa8.82□□□□□ -1
SS18-221ENST00000582448 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.82□□□□□ -1
SS18-221ENST00000582448 ISPDA4D126 451 aa8.82□□□□□ -1
SS18-221ENST00000582448 RPL36A-HNRNPH2H7BZ11 118 aa8.82□□□□□ -1
SS18-221ENST00000582448 SYT7O43581 403 aa8.82□□□□□ -1
SS18-221ENST00000582448 SRSF10O75494 262 aaKnown RBP8.82□□□□□ -1
SS18-221ENST00000582448 PNPP00491 289 aa8.82□□□□□ -1
SS18-221ENST00000582448 CRHP06850 196 aa8.82□□□□□ -1
SS18-221ENST00000582448 ERCC1P07992 297 aaPredicted RBP8.82□□□□□ -1
SS18-221ENST00000582448 B4GALT1P15291 398 aa8.82□□□□□ -1
SS18-221ENST00000582448 APEX1P27695 318 aaKnown RBP8.82□□□□□ -1
SS18-221ENST00000582448 LOXP28300 417 aaPredicted RBP8.82□□□□□ -1
SS18-221ENST00000582448 CAPZA1P52907 286 aa8.82□□□□□ -1
SS18-221ENST00000582448 HIST1H3AP68431 136 aa8.82□□□□□ -1
SS18-221ENST00000582448 KRTAP1-1Q07627 177 aa8.82□□□□□ -1
SS18-221ENST00000582448 BEX5Q5H9J7 111 aa8.82□□□□□ -1
SS18-221ENST00000582448 CEP78Q5JTW2 689 aa8.82□□□□□ -1
SS18-221ENST00000582448 HIST2H3PS2Q5TEC6 136 aa8.82□□□□□ -1
SS18-221ENST00000582448 TSPO2Q5TGU0 170 aa8.82□□□□□ -1
SS18-221ENST00000582448 GLT8D1Q68CQ7 371 aa8.82□□□□□ -1
SS18-221ENST00000582448 BAIAP2L2Q6UXY1 529 aa8.82□□□□□ -1
SS18-221ENST00000582448 HIST2H3AQ71DI3 136 aa8.82□□□□□ -1
SS18-221ENST00000582448 LRRC28Q86X40 367 aaPredicted RBP8.82□□□□□ -1
SS18-221ENST00000582448 MED12LQ86YW9 2145 aa8.82□□□□□ -1
SS18-221ENST00000582448 RDH10Q8IZV5 341 aa8.82□□□□□ -1
SS18-221ENST00000582448 OR8H2Q8N162 312 aa8.82□□□□□ -1
SS18-221ENST00000582448 SAMD12Q8N8I0 201 aa8.82□□□□□ -1
SS18-221ENST00000582448 OR5D14Q8NGL3 314 aa8.82□□□□□ -1
SS18-221ENST00000582448 OR10S1Q8NGN2 331 aa8.82□□□□□ -1
SS18-221ENST00000582448 TRMT10AQ8TBZ6 339 aaKnown RBP8.82□□□□□ -1
SS18-221ENST00000582448 AKAP1Q92667 903 aaKnown RBP eCLIP8.82□□□□□ -1
SS18-221ENST00000582448 SH3GL3Q99963 347 aa8.82□□□□□ -1
SS18-221ENST00000582448 REG4Q9BYZ8 158 aa8.82□□□□□ -1
SS18-221ENST00000582448 PPIL3Q9H2H8 161 aaKnown RBP8.82□□□□□ -1
SS18-221ENST00000582448 G6PC2Q9NQR9 355 aa8.82□□□□□ -1
SS18-221ENST00000582448 RABL2AQ9UBK7 228 aaPredicted RBP8.82□□□□□ -1
SS18-221ENST00000582448 CDC42EP3Q9UKI2 254 aa8.82□□□□□ -1
SS18-221ENST00000582448 CLEC4AQ9UMR7 237 aa8.82□□□□□ -1
SS18-221ENST00000582448 RABL2BQ9UNT1 228 aa8.82□□□□□ -1
SS18-221ENST00000582448 FOXJ3Q9UPW0 622 aa8.82□□□□□ -1
SS18-221ENST00000582448 CHD3Q12873 2000 aaKnown RBP8.81□□□□□ -1
SS18-221ENST00000582448 USF3Q68DE3 2245 aa8.81□□□□□ -1
SS18-221ENST00000582448 OR6C6A6NF89 314 aa8.81□□□□□ -1
SS18-221ENST00000582448 IFITM5A6NNB3 132 aa8.81□□□□□ -1
SS18-221ENST00000582448 F5H5K5 113 aa8.81□□□□□ -1
SS18-221ENST00000582448 AIPO00170 330 aa8.81□□□□□ -1
SS18-221ENST00000582448 P2RY10O00398 339 aa8.81□□□□□ -1
SS18-221ENST00000582448 DOK2O60496 412 aa8.81□□□□□ -1
SS18-221ENST00000582448 HPGDSO60760 199 aa8.81□□□□□ -1
SS18-221ENST00000582448 SS18L1O75177 396 aaPredicted RBP8.81□□□□□ -1
SS18-221ENST00000582448 MTRF1O75570 445 aaKnown RBP8.81□□□□□ -1
SS18-221ENST00000582448 UPK1BO75841 260 aa8.81□□□□□ -1
SS18-221ENST00000582448 IGHV3-9P01782 118 aa8.81□□□□□ -1
SS18-221ENST00000582448 APOA1P02647 267 aa8.81□□□□□ -1
SS18-221ENST00000582448 MAS1P04201 325 aa8.81□□□□□ -1
SS18-221ENST00000582448 OCMP0CE72 109 aaPredicted RBP8.81□□□□□ -1
SS18-221ENST00000582448 ARR3P36575 388 aa8.81□□□□□ -1
SS18-221ENST00000582448 GNALP38405 381 aa8.81□□□□□ -1
SS18-221ENST00000582448 INPP1P49441 399 aa8.81□□□□□ -1
SS18-221ENST00000582448 OR10A3P58181 314 aa8.81□□□□□ -1
SS18-221ENST00000582448 ZNF121P58317 390 aaPredicted RBP8.81□□□□□ -1
SS18-221ENST00000582448 ARF1P84077 181 aaKnown RBP8.81□□□□□ -1
SS18-221ENST00000582448 PITPNAQ00169 270 aa8.81□□□□□ -1
SS18-221ENST00000582448 TGFBR3Q03167 851 aa8.81□□□□□ -1
SS18-221ENST00000582448 FAPQ12884 760 aa8.81□□□□□ -1
SS18-221ENST00000582448 IL18Q14116 193 aa8.81□□□□□ -1
SS18-221ENST00000582448 RNF151Q2KHN1 245 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms