RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 STX5Q13190 355 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 KLHL22Q53GT1 634 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 GPR107Q5VW38 600 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 RNLSQ5VYX0 342 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 C22orf42Q6IC83 251 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 PAQR6Q6TCH4 344 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 NPSR1Q6W5P4 371 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 SLC16A14Q7RTX9 510 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 C6orf120Q7Z4R8 191 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 CATSPERDQ86XM0 798 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 APRG1Q8IVJ8 170 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 CDK20Q8IZL9 346 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 NECAP1Q8NC96 275 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 OR5M9Q8NGP3 310 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 TMEM239Q8WW34 195 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 PIK3R3Q92569 461 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 SLC35G5Q96KT7 338 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 OR52E6Q96RD3 313 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 CCDC28BQ9BUN5 200 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 MCRIP2Q9BUT9 160 aaKnown RBP5.17□□□□□ -1.58
VPS53-212ENST00000572259 SRRQ9GZT4 340 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 SLITRK2Q9H156 845 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 OR51V1Q9H2C8 321 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 SLC38A1Q9H2H9 487 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 WDR55Q9H6Y2 383 aaPredicted RBP5.17□□□□□ -1.58
VPS53-212ENST00000572259 MAP6D1Q9H9H5 199 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 S100A14Q9HCY8 104 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 KCNJ16Q9NPI9 418 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 INPP5EQ9NRR6 644 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 AIG1Q9NVV5 245 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 MRPL39Q9NYK5 338 aaKnown RBP5.17□□□□□ -1.58
VPS53-212ENST00000572259 ELOVL5Q9NYP7 299 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 BTNL2Q9UIR0 455 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 NUP50Q9UKX7 468 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 USH1CQ9Y6N9 552 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 ABCA4P78363 2273 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 IGLV5-39A0A0G2JS06 123 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 A0A1W2PQD3 144 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 FABP12A6NFH5 140 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 SRRM4A7MD48 611 aaKnown RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 PRSS44E7EML9 344 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ATP8B1O43520 1251 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 AIREO43918 545 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ANGPTL1O95841 491 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 EPPINO95925 133 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ZNF26P17031 533 aaPredicted RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 PMCHP20382 165 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 DCKP27707 260 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 HTR1EP28566 365 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 PTGDSP41222 190 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 MAP3K8P41279 467 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ZFP36L2P47974 494 aaKnown RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 POLR2JP52435 117 aaKnown RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 RPS4XP62701 263 aaKnown RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 ERVK-25P63136 954 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 HPCAP84074 193 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 DUSP5Q16690 384 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ZNF630Q2M218 657 aaPredicted RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 SPANXN4Q5MJ08 99 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 DCST2Q5T1A1 773 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 PDSS1Q5T2R2 415 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 OR5M10Q6IEU7 315 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 EPGNQ6UW88 154 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 C3P1Q6ZMU1 363 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 LRRC74BQ6ZQY2 392 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 Q6ZRG5 221 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 SLC16A12Q6ZSM3 486 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ZNF621Q6ZSS3 439 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 LACC1Q8IV20 430 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 SYS1Q8N2H4 156 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 DHRSXQ8N5I4 330 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 JAGN1Q8N5M9 183 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 WDSUB1Q8N9V3 476 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 FAM110BQ8TC76 370 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ZPLD1Q8TCW7 415 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 MAGEE2Q8TD90 523 aaPredicted RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 ITLN2Q8WWU7 325 aaPredicted RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 CDS1Q92903 461 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 PPP1R14BQ96C90 147 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 TIMD4Q96H15 378 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ITCHQ96J02 903 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 ZFP3Q96NJ6 502 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 CCDC115Q96NT0 180 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 OR7D2Q96RA2 312 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 SLC35A5Q9BS91 424 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 MAP1LC3CQ9BXW4 147 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 RACGAP1Q9H0H5 632 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 DSN1Q9H410 356 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 CACYBPQ9HB71 228 aaKnown RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 ZC4H2Q9NQZ6 224 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 THUMPD1Q9NXG2 353 aaKnown RBP5.16□□□□□ -1.58
VPS53-212ENST00000572259 IL36GQ9NZH8 169 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 MED11Q9P086 117 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 WIPI2Q9Y4P8 454 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 URGCP-MRPS24S4R325 110 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 HCFC1P51610 2035 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 CRYBG3Q68DQ2 2970 aa5.16□□□□□ -1.58
VPS53-212ENST00000572259 IGLV3-32A0A0A0MS00 114 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 TRBV9A0A0B4J1U6 114 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 TEX13DA0A0J9YY54 714 aaPredicted RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms