RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 RBMXL3Q8N7X1 1067 aaKnown RBP13.69□□□□□ -0.22
CIITA-204ENST00000570546 OR5M8Q8NGP6 311 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 C12orf57Q99622 126 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 CHST6Q9GZX3 395 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 KLF13Q9Y2Y9 288 aaPredicted RBP13.69□□□□□ -0.22
CIITA-204ENST00000570546 SDK1Q7Z5N4 2213 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 MBTPS2O43462 519 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 ENSAO43768 121 aaKnown RBP13.69□□□□□ -0.22
CIITA-204ENST00000570546 GP1BAP07359 652 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 RFC3P40938 356 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 GPM6AP51674 278 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 INSM1Q01101 510 aaPredicted RBP13.69□□□□□ -0.22
CIITA-204ENST00000570546 RAB32Q13637 225 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 Q7L0L9 218 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 ZNF321PQ8N8H1 164 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 UFSP2Q9NUQ7 469 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 FIGNL2A6NMB9 653 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 PTP4A3O75365 173 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 FUT3P21217 361 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 CSF2RBP32927 897 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 AKR1C3P42330 323 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 ISXQ2M1V0 245 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 EXTL1Q92935 676 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 LRRC3BQ96PB8 259 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 OSGIN2Q9Y236 505 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 MTCH2Q9Y6C9 303 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 ZNF727A8MUV8 499 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 PPP5D1E7EU14 171 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 BAGE3Q86Y29 109 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 BAGE2Q86Y30 109 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 TMEM52Q8NDY8 209 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 SCMH1Q96GD3 660 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 LINC00052Q96N35 136 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 TDRD15B5MCY1 1934 aaKnown RBP13.68□□□□□ -0.22
CIITA-204ENST00000570546 IGKV1-8A0A0C4DH67 115 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 A0A1W2PQD3 144 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 H7BYZ3 331 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 SKP2Q13309 424 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 SLC10A1Q14973 349 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 DRAM2Q6UX65 266 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 CRISPLD2Q9H0B8 497 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 OR4C45A6NMZ5 311 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 GPR31O00270 319 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 PJVKQ0ZLH3 352 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 OR4F5Q8NH21 305 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 OR4F4Q96R69 305 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 PCDHGA9Q9Y5G4 932 aaKnown RBP13.68□□□□□ -0.22
CIITA-204ENST00000570546 DSPPQ9NZW4 1301 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 NKX6-3A6NJ46 265 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 FAM157BP0CG42 384 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 RRASP10301 218 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 GALNSP34059 522 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 MIDNQ504T8 468 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 B3GNTL1Q67FW5 361 aaPredicted RBP13.68□□□□□ -0.22
CIITA-204ENST00000570546 C6orf201Q7Z4U5 140 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 CHAC2Q8WUX2 184 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 HPSE2Q8WWQ2 592 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 PRSS27Q9BQR3 290 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 PCOLCE2Q9UKZ9 415 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 IGHV1OR15-9A0A0B4J2B8 117 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 ERGP11308 486 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 ZNF92Q03936 586 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 OR10P1Q8NGE3 313 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 LHX4Q969G2 390 aa13.68□□□□□ -0.22
CIITA-204ENST00000570546 TRAV8-7A0A075B6U6 113 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 S100A8P05109 93 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 GUSBP11Q6P575 273 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 SEZ6L2Q6UXD5 910 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 C20orf196Q8IYI0 205 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 NECAP1Q8NC96 275 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 WFDC6Q9BQY6 131 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 FAAP24Q9BTP7 215 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 TMPRSS13Q9BYE2 586 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 SPINT1O43278 529 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 FUT5Q11128 374 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 PRSS54Q6PEW0 395 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 HSD17B13Q7Z5P4 300 aaPredicted RBP13.67□□□□□ -0.22
CIITA-204ENST00000570546 COMMD1Q8N668 190 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 GNRHR2Q96P88 292 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 MENTQ9BUN1 341 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 ACTR3CQ9C0K3 210 aaPredicted RBP13.67□□□□□ -0.22
CIITA-204ENST00000570546 NTMQ9P121 344 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 MGST1P10620 155 aaKnown RBP13.67□□□□□ -0.22
CIITA-204ENST00000570546 KIR2DL1P43626 348 aaPredicted RBP13.67□□□□□ -0.22
CIITA-204ENST00000570546 PDCD1Q15116 288 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 HLA-BQ31612 363 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 BRWD3Q6RI45 1802 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 LINC00862A6NCI5 91 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 ACAA2P42765 397 aaKnown RBP13.67□□□□□ -0.22
CIITA-204ENST00000570546 GPR12P47775 334 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 GGTLC2Q14390 218 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 GUK1Q16774 197 aa13.67□□□□□ -0.22
CIITA-204ENST00000570546 LIMK1P53667 647 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 FAHD2BQ6P2I3 314 aaPredicted RBP13.66□□□□□ -0.22
CIITA-204ENST00000570546 SSX9Q7RTT3 188 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 CARFQ8N187 725 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 ADPRHL1Q8NDY3 354 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 APOBEC3DQ96AK3 386 aaPredicted RBP13.66□□□□□ -0.22
CIITA-204ENST00000570546 TVP23CQ96ET8 276 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 FAHD2AQ96GK7 314 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms