RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 HIST1H2AAQ96QV6 131 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 OR51I2Q9H344 312 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 MOB1AQ9H8S9 216 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 FAM118AQ9NWS6 357 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 IGHV2-70DA0A0C4DH43 119 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 LOC100130705A0A1B0GUX0 176 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 A6NIN4 97 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 SRRM5B3KS81 715 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 ZNF732B4DXR9 585 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 C22orf46C9J442 243 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 NDUFA2O43678 99 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 VENTXO95231 258 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 MUC1P15941 1255 aaPredicted RBP12.49□□□□□ -0.41
VPS39-210ENST00000568357 AMY2BP19961 511 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 GMFBP60983 142 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 ISL1P61371 349 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 MICBQ29980 383 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 ODF4Q2M2E3 257 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 TP53I3Q53FA7 332 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 KLF17Q5JT82 389 aaPredicted RBP12.49□□□□□ -0.41
VPS39-210ENST00000568357 Q6ZSR3 168 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 PRSS35Q8N3Z0 413 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 OR5A2Q8NGI9 324 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 OR14K1Q8NGZ2 314 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 C22orf15Q8WYQ4 148 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 WDR13Q9H1Z4 485 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 SMURF1Q9HCE7 757 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 TRIM36Q9NQ86 728 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 ERVK-18Q9QC07 812 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 ENPP5Q9UJA9 477 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 V9GYS6 101 aa12.49□□□□□ -0.41
VPS39-210ENST00000568357 MEGF8Q7Z7M0 2845 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 A0A1B0GW55 424 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 H3BSH0 61 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DLGAP1O14490 977 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 SLC16A6O15403 523 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 SPRY1O43609 319 aaPredicted RBP12.48□□□□□ -0.41
VPS39-210ENST00000568357 MTRF1O75570 445 aaKnown RBP12.48□□□□□ -0.41
VPS39-210ENST00000568357 RHBDL1O75783 438 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 NRASP01111 189 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DUX4L2P0CJ85 424 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DUX4L3P0CJ86 424 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DUX4L4P0CJ87 422 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DUX4L5P0CJ88 424 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DUX4L6P0CJ89 424 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DUX4L7P0CJ90 424 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 CCL1P22362 96 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 NPY4RP50391 375 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 GNG3P63215 75 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 TMEM42Q69YG0 159 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DUX4L9Q6RFH8 374 aaPredicted RBP12.48□□□□□ -0.41
VPS39-210ENST00000568357 BTNL3Q6UXE8 466 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 OR5T2Q8NGG2 359 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 OR10Z1Q8NGY1 313 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 STMN2Q93045 179 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 LGALS12Q96DT0 336 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 CCL13Q99616 98 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 NUDT16L1Q9BRJ7 211 aaKnown RBP12.48□□□□□ -0.41
VPS39-210ENST00000568357 MRI1Q9BV20 369 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 AMBNQ9NP70 447 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 SNTG1Q9NSN8 517 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 ACOXLQ9NUZ1 547 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 KAAG1Q9UBP8 84 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 DUX4Q9UBX2 424 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 GNG8Q9UK08 70 aa12.48□□□□□ -0.41
VPS39-210ENST00000568357 EXOGQ9Y2C4 368 aaKnown RBP12.48□□□□□ -0.41
VPS39-210ENST00000568357 DAPL1A0PJW8 107 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 ANKRD65E5RJM6 399 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 DVL1O14640 695 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 TMPRSS2O15393 492 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 AKR7A2O43488 359 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 TFF1P04155 84 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 OR12D2P58182 307 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 SCGB2A2Q13296 93 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 WDR38Q5JTN6 314 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 PLCXD3Q63HM9 321 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 DOK3Q7L591 496 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 RDH10Q8IZV5 341 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 FGFRL1Q8N441 504 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 TECTBQ96PL2 329 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 SLC6A7Q99884 636 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 GPR173Q9NS66 373 aa12.47□□□□□ -0.41
VPS39-210ENST00000568357 IGHV3OR16-10A0A075B7F0 116 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 OR5B21A6NL26 309 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 SNTNA6NMZ2 147 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 MPZL2O60487 215 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 PPIAL4GP0DN37 164 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 DBTP11182 482 aaKnown RBP12.46□□□□□ -0.41
VPS39-210ENST00000568357 KIR3DL2P43630 455 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 TGM4P49221 684 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 ZNF91Q05481 1191 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 ZSCAN26Q16670 478 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 LRRC36Q1X8D7 754 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 CDONQ4KMG0 1287 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 CLVS2Q5SYC1 327 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 ATPAF1Q5TC12 328 aaPredicted RBP12.46□□□□□ -0.41
VPS39-210ENST00000568357 CD276Q5ZPR3 534 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 LPCAT4Q643R3 524 aa12.46□□□□□ -0.41
VPS39-210ENST00000568357 HAGHLQ6PII5 290 aaPredicted RBP12.46□□□□□ -0.41
VPS39-210ENST00000568357 KCTD20Q7Z5Y7 419 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms