RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 CITED4Q96RK1 184 aa9.34□□□□□ -0.91
CLK3-222ENST00000568232 P2RX4Q99571 388 aa9.34□□□□□ -0.91
CLK3-222ENST00000568232 FNDC11Q9BVV2 318 aa9.34□□□□□ -0.91
CLK3-222ENST00000568232 KRTAP4-6Q9BYQ5 205 aa9.34□□□□□ -0.91
CLK3-222ENST00000568232 FGF23Q9GZV9 251 aaPredicted RBP9.34□□□□□ -0.91
CLK3-222ENST00000568232 NSRP1Q9H0G5 558 aaKnown RBP9.34□□□□□ -0.91
CLK3-222ENST00000568232 YY1AP1Q9H869 796 aa9.34□□□□□ -0.91
CLK3-222ENST00000568232 SP140LQ9H930 580 aa9.34□□□□□ -0.91
CLK3-222ENST00000568232 ZNF222Q9UK12 451 aa9.34□□□□□ -0.91
CLK3-222ENST00000568232 RHBDD3Q9Y3P4 386 aa9.34□□□□□ -0.91
CLK3-222ENST00000568232 TBL2Q9Y4P3 447 aaKnown RBP9.34□□□□□ -0.91
CLK3-222ENST00000568232 MEX3AA1L020 520 aaKnown RBP9.33□□□□□ -0.92
CLK3-222ENST00000568232 FAM90A22PA8MWA6 464 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 HLA-DQA2P01906 255 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 TROVE2P10155 538 aaKnown RBP eCLIP9.33□□□□□ -0.92
CLK3-222ENST00000568232 PSKH1P11801 424 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 OTX1P32242 354 aaPredicted RBP9.33□□□□□ -0.92
CLK3-222ENST00000568232 GNALP38405 381 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 DDOSTP39656 456 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 MYCNOSP40205 109 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 IDH3AP50213 366 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 DYNLT3P51808 116 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 RAB25P57735 213 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 MAGOHP61326 146 aaKnown RBP9.33□□□□□ -0.92
CLK3-222ENST00000568232 SPIBQ01892 262 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 SLC34A1Q06495 639 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 TRAM2Q15035 370 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 CYBRD1Q53TN4 286 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 DNM1P34Q6PK57 102 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 DRAM2Q6UX65 266 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 OVCH2Q7RTZ1 564 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 OR2W3Q7Z3T1 314 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 CPLX4Q7Z7G2 160 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 RNF113BQ8IZP6 322 aaKnown RBP9.33□□□□□ -0.92
CLK3-222ENST00000568232 LINC00471Q8N535 108 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 LZICQ8WZA0 190 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 SPSB4Q96A44 273 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 FAM46AQ96IP4 442 aaKnown RBP9.33□□□□□ -0.92
CLK3-222ENST00000568232 NMNAT3Q96T66 252 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 FAM107BQ9H098 131 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 FN3KQ9H479 309 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 RPRD1BQ9NQG5 326 aaKnown RBP9.33□□□□□ -0.92
CLK3-222ENST00000568232 MRPL22Q9NWU5 206 aaKnown RBP9.33□□□□□ -0.92
CLK3-222ENST00000568232 USE1Q9NZ43 259 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 SIGLEC7Q9Y286 467 aa9.33□□□□□ -0.92
CLK3-222ENST00000568232 RBMY1BA6NDE4 496 aaKnown RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 RBMY1EA6NEQ0 496 aaKnown RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 NUDT19A8MXV4 375 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 TBX1O43435 398 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 TXNDC12O95881 172 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 AMY1AP04745 511 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 AMY2AP04746 511 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 RBMY1DP0C7P1 496 aaKnown RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 GLRA1P23415 457 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 AZGP1P25311 298 aaKnown RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 ENTPD1P49961 510 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 OR12D2P58182 307 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 DYNC1I2Q13409 638 aaKnown RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 SLC36A3Q495N2 470 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 LRRC23Q53EV4 343 aaPredicted RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 KLHL12Q53G59 568 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 ZNF626Q68DY1 528 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 PIGWQ7Z7B1 504 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 OFCC1Q8IZS5 231 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 OSR2Q8N2R0 312 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 CYB561A3Q8NBI2 242 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 OR2T27Q8NH04 317 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 SGK3Q96BR1 496 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 RBMXL1Q96E39 390 aaKnown RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 SDSLQ96GA7 329 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 GPX7Q96SL4 187 aaPredicted RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 MICU1Q9BPX6 476 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 PAPOLGQ9BWT3 736 aaKnown RBP9.32□□□□□ -0.92
CLK3-222ENST00000568232 OPA3Q9H6K4 179 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 SCOCQ9UIL1 159 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 LRP12Q9Y561 859 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 SMAD5-AS1Q9Y6J3 95 aa9.32□□□□□ -0.92
CLK3-222ENST00000568232 hCG_1809904A0A1W2PP81 198 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 A0A1W2PPE2 198 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 A0A1W2PPH5 198 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 A0A1W2PR64 198 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 A0A1W2PRV1 198 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 TMEM120BA0PK00 339 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 XRCC2O43543 280 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 PIPP12273 146 aaPredicted RBP9.31□□□□□ -0.92
CLK3-222ENST00000568232 IFNA8P32881 189 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 RPS6KA3P51812 740 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 SLC7A2P52569 658 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 DLX6P56179 175 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 C9orf152Q5JTZ5 239 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 DPY19L2P2Q6ZN68 376 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 KCTD8Q6ZWB6 473 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 KLHL30-AS1Q8NEE0 82 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 OR13D1Q8NGV5 346 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 OR4K13Q8NH42 304 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 REEP6Q96HR9 211 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 ERMAPQ96PL5 475 aaPredicted RBP9.31□□□□□ -0.92
CLK3-222ENST00000568232 COPS4Q9BT78 406 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 RTL8AQ9BWD3 113 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 NDEL1Q9GZM8 345 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms