RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PRAMEF26H0Y7S4 382 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 C3orf84H3BNL1 204 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 CLDN34H7C241 214 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 NIPSNAP2O75323 286 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 OR2F2O95006 317 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 RPN2P04844 631 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 TPM3P06753 285 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 ERCC1P07992 297 aaPredicted RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 CT45A6P0DMU7 189 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CT45A5P0DMU8 189 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CT45A7P0DMV0 189 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 LCN1P31025 176 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 OTX1P32242 354 aaPredicted RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 FOXN2P32314 431 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 GGT2P36268 569 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 SLC1A1P43005 524 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 GPR4P46093 362 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 SERPINB8P50452 374 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 TPM4P67936 248 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 IRF8Q02556 426 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 ILKQ13418 452 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 PNOCQ13519 176 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 TRAM2Q15035 370 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 PSMD5Q16401 504 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 BEX5Q5H9J7 111 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CT45A1Q5HYN5 189 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 C9orf135Q5VTT2 229 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 SLC25A25Q6KCM7 469 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 APOBEC3HQ6NTF7 200 aaKnown RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 CERS6Q6ZMG9 384 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 SSX9Q7RTT3 188 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CMC1Q7Z7K0 106 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 SCD5Q86SK9 330 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 FAM58AQ8N1B3 248 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 GABRG1Q8N1C3 465 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CBR4Q8N4T8 237 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 OR7G2Q8NG99 324 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 OR4A4PQ8NGN8 299 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 OR5AR1Q8NGP9 310 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CT45A3Q8NHU0 189 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 NDNFQ8TB73 568 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 LRRC20Q8TCA0 184 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 GPX8Q8TED1 209 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CCDC12Q8WUD4 166 aaPredicted RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 NRGNQ92686 78 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 RAB1CQ92928 201 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 SLC38A4Q969I6 547 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CIDECQ96AQ7 238 aaPredicted RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 TRNT1Q96Q11 434 aaKnown RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 CYTH2Q99418 400 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 TMEM175Q9BSA9 504 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 C20orf24Q9BUV8 137 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 IL22Q9GZX6 179 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 ILKAPQ9H0C8 392 aaPredicted RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 GAL3ST2Q9H3Q3 398 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 MRPS30Q9NP92 439 aaKnown RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 MED4Q9NPJ6 270 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 PXMP2Q9NR77 195 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 NRBP2Q9NSY0 501 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 MTCH1Q9NZJ7 389 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CHMP5Q9NZZ3 219 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 CCDC59Q9P031 241 aaKnown RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 ZNF492Q9P255 531 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 STX18Q9P2W9 335 aaKnown RBP0.97□□□□□ -2.25
VPS35-207ENST00000568191 CD300AQ9UGN4 299 aa0.97□□□□□ -2.25
VPS35-207ENST00000568191 UBN2Q6ZU65 1347 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 ADGRA3Q8IWK6 1321 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 GSTTP1A0A1W2PQM5 241 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 GOLGA6L4A6NEF3 574 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 PDZK1P1A8MUH7 402 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 TNFRSF11BO00300 401 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 NME4O00746 187 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 BCKDKO14874 412 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 KDELR3O43731 214 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 SLC19A2O60779 497 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 CDK14O94921 469 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 CD160O95971 181 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 INAFM2P0DMQ5 153 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 BCKDHBP21953 392 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 USF1P22415 310 aaPredicted RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 STOMP27105 288 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 HLA-DMAP28067 261 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 GTF2E2P29084 291 aaKnown RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 RRM2P31350 389 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 TALDO1P37837 337 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 SPAM1P38567 509 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 UQCRFS1P47985 274 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 UBE2E1P51965 193 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 MYL6P60660 151 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 UBE2MP61081 183 aaKnown RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 UBE2IP63279 158 aaKnown RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 TNNC1P63316 161 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 MRPS15P82914 257 aaKnown RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 PPIDQ08752 370 aaKnown RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 GPR176Q14439 515 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 ITIH4Q14624 930 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 STK38Q15208 465 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 SLC9A3R2Q15599 337 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 USF2Q15853 346 aaPredicted RBP0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms