RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PLGLB1Q02325 96 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 IKZF1Q13422 519 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 ADAD2Q8NCV1 583 aaKnown RBP17.64■□□□□ 0.41
CLN3-230ENST00000568076 CPEB3Q8NE35 698 aaKnown RBP17.64■□□□□ 0.41
CLN3-230ENST00000568076 ST8SIA4Q92187 359 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 FER1L6-AS2Q96M78 137 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 S100A13Q99584 98 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 LINC00470Q9BZP3 86 aa17.64■□□□□ 0.41
CLN3-230ENST00000568076 ZNF230Q9UIE0 474 aaPredicted RBP17.64■□□□□ 0.41
CLN3-230ENST00000568076 HMSDA8MTL9 139 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 ARPC5O15511 151 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 NME2P1O60361 137 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 NME2P22392 152 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 CD34P28906 385 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 FOXG1P55316 489 aaPredicted RBP17.63■□□□□ 0.41
CLN3-230ENST00000568076 ZNF92Q03936 586 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 ARFRP1Q13795 201 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 PABPC1L2AQ5JQF8 200 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 VAX1Q5SQQ9 334 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 CLVS2Q5SYC1 327 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 TMEM42Q69YG0 159 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 LYG2Q86SG7 212 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 HOGA1Q86XE5 327 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 SPSB1Q96BD6 273 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 IRF2BPLQ9H1B7 796 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 CALHM2Q9HA72 323 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 PCNX2A6NKB5 2137 aa17.63■□□□□ 0.41
CLN3-230ENST00000568076 hCG_38984A0A1B0GV85 526 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 C9orf170A2RU37 121 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 EDN3P14138 238 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 ARF1P84077 181 aaKnown RBP17.62■□□□□ 0.41
CLN3-230ENST00000568076 FAM3AP98173 230 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 TGIF1Q15583 401 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 NRN1LQ496H8 165 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 C9orf135Q5VTT2 229 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 SUMF1Q8NBK3 374 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 OR5M8Q8NGP6 311 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 MARCH1Q8TCQ1 289 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 NOP16Q9Y3C1 178 aaKnown RBP17.62■□□□□ 0.41
CLN3-230ENST00000568076 FXYD6-FXYD2A0A087WZ82 144 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 TRAV14DV4A0A0A6YYC5 116 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 FAM230AA0A1W2PPH8 454 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 RPS10-NUDT3A0A1W2PQS6 291 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 OR6C65A6NJZ3 312 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 EFSO43281 561 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 ANGPTL7O43827 346 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 FARS2O95363 451 aaKnown RBP17.62■□□□□ 0.41
CLN3-230ENST00000568076 SYNGR4O95473 234 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 IFNA7P01567 189 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 TMEM225BP0DP42 221 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 SORDQ00796 357 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 GK2Q14410 553 aaPredicted RBP17.62■□□□□ 0.41
CLN3-230ENST00000568076 C3AR1Q16581 482 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 ASB13Q8WXK3 278 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 CITED4Q96RK1 184 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 FXYD6Q9H0Q3 95 aa17.62■□□□□ 0.41
CLN3-230ENST00000568076 SPRY1O43609 319 aaPredicted RBP17.61■□□□□ 0.41
CLN3-230ENST00000568076 NOS1APO75052 506 aaPredicted RBP17.61■□□□□ 0.41
CLN3-230ENST00000568076 PPP3CBP16298 524 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 CPT2P23786 658 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 CBX5P45973 191 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 PIP4P1Q86T03 277 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 TERB2Q8NHR7 220 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 Q96M66 194 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 ST6GALNAC5Q9BVH7 336 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 ZNF391Q9UJN7 358 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 KLF13Q9Y2Y9 288 aaPredicted RBP17.61■□□□□ 0.41
CLN3-230ENST00000568076 LIPGQ9Y5X9 500 aa17.61■□□□□ 0.41
CLN3-230ENST00000568076 A0A096LPE4 126 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 A0A1W2PPZ6 126 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 ZNF587BE7ETH6 402 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 RPL36A-HNRNPH2H7BZ11 118 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 CCSO14618 274 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 GALR2O43603 387 aaPredicted RBP17.6■□□□□ 0.41
CLN3-230ENST00000568076 ACTBL2Q562R1 376 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 LIN54Q6MZP7 749 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 FAHD2BQ6P2I3 314 aaPredicted RBP17.6■□□□□ 0.41
CLN3-230ENST00000568076 ZNF100Q8IYN0 542 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 ARRDC1Q8N5I2 433 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 MITD1Q8WV92 249 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 MAFIPQ8WZ33 124 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 FAHD2AQ96GK7 314 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 BCO1Q9HAY6 547 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 PARPBPQ9NWS1 579 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 UBQLN2Q9UHD9 624 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 MCTS1Q9ULC4 181 aaKnown RBP17.6■□□□□ 0.41
CLN3-230ENST00000568076 PLATP00750 562 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 NRASP01111 189 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 AMY2BP19961 511 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 GABRR1P24046 479 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 PPIAP62937 165 aaKnown RBP17.6■□□□□ 0.41
CLN3-230ENST00000568076 IL13RA1P78552 427 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 SRSF4Q08170 494 aaKnown RBP17.6■□□□□ 0.41
CLN3-230ENST00000568076 CNN3Q15417 329 aaKnown RBP17.6■□□□□ 0.41
CLN3-230ENST00000568076 C6orf201Q7Z4U5 140 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 PCNPQ8WW12 178 aaKnown RBP17.6■□□□□ 0.41
CLN3-230ENST00000568076 C1QTNF5Q9BXJ0 243 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 RGCCQ9H4X1 137 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 KCNN3Q9UGI6 736 aa17.6■□□□□ 0.41
CLN3-230ENST00000568076 TTC28Q96AY4 2481 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms