RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 RPL36A-HNRNPH2H7BZ11 118 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 FARS2O95363 451 aaKnown RBP5.46□□□□□ -1.54
CLN3-223ENST00000566472 CRHP06850 196 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 FGF2P09038 288 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 JMJD7P0C870 316 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 PET100P0DJ07 73 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 COX5BP10606 129 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 LYL1P12980 280 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 ZNF32P17041 273 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 TCN2P20062 427 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 ANOS1P23352 680 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 VAMP1P23763 118 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 GDF1P27539 372 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 BLVRBP30043 206 aaPredicted RBP5.46□□□□□ -1.54
CLN3-223ENST00000566472 MPLP40238 635 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 SNU13P55769 128 aaKnown RBP5.46□□□□□ -1.54
CLN3-223ENST00000566472 GFRA1P56159 465 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 NAAAQ02083 359 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 OR8B8Q15620 311 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 SFRP5Q5T4F7 317 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 CDCP2Q5VXM1 449 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 SIGIRRQ6IA17 410 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 TIPARPQ7Z3E1 657 aaKnown RBP5.46□□□□□ -1.54
CLN3-223ENST00000566472 RNF144BQ7Z419 303 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 YRDCQ86U90 279 aaKnown RBP5.46□□□□□ -1.54
CLN3-223ENST00000566472 LRRC18Q8N456 261 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 ZSCAN4Q8NAM6 433 aaPredicted RBP5.46□□□□□ -1.54
CLN3-223ENST00000566472 ADAD2Q8NCV1 583 aaKnown RBP5.46□□□□□ -1.54
CLN3-223ENST00000566472 CSNK2A3Q8NEV1 391 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 OR5AP2Q8NGF4 316 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 OR13G1Q8NGZ3 307 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 STOML3Q8TAV4 291 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 MARCH1Q8TCQ1 289 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 PPP1R1CQ8WVI7 109 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 SPSB4Q96A44 273 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 TMEM230Q96A57 120 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 REEP6Q96HR9 211 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 SPACA5Q96QH8 159 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 ARPC5LQ9BPX5 153 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 OR2H1Q9GZK4 316 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 PRDM14Q9GZV8 571 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 WNT5BQ9H1J7 359 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 C5orf66Q9H5L9 145 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 FN3KRPQ9HA64 309 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 GPR35Q9HC97 309 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 DECR2Q9NUI1 292 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 GLS2Q9UI32 602 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 C14orf166Q9Y224 244 aaKnown RBP5.46□□□□□ -1.54
CLN3-223ENST00000566472 COL27A1Q8IZC6 1860 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 CACNA1EQ15878 2313 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 MKI67P46013 3256 aaKnown RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 TEX13DA0A0J9YY54 714 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 ZNF816-ZNF321PA0A0X1KG74 233 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 A0A1W2PP11 408 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 C5orf63A6NC05 138 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A10PA6NDY2 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A18PA6NE21 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A16PA6NEW6 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A20PA6NIJ5 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A8PA6NJQ4 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A7PA6NKC0 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A22PA8MWA6 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A12PA8MX19 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A5PA8MXJ8 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 A8MXK9 166 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A23PA8MXZ1 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 B8ZZF3 427 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 PRSS44E7EML9 344 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 F8VVB4 439 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 F8VWA3 439 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 CCSO14618 274 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 TERTO14746 1132 aaKnown RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 TPD52L2O43399 206 aaKnown RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 CSTBP04080 98 aaKnown RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 LCATP04180 440 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 SERPINA5P05154 406 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 CTSDP07339 412 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 MMP7P09237 267 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A15PP0C7V4 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A13PP0C7W8 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A14PP0C7W9 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FAM90A24PP0C7X0 464 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 LIPCP11150 499 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 AKR1C4P17516 323 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 SERPINA2P20848 420 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 PSMB6P28072 239 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 SERPINF1P36955 418 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 NUP62P37198 522 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 HTR5AP47898 357 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 RGS19P49795 217 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 RBP2P50120 134 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FUT6P51993 359 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 ATP1B3P54709 279 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 RPS18P62269 152 aaKnown RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 EIF5AP63241 154 aaKnown RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 PSG4Q00888 419 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 FOXO1Q12778 655 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 HYAL4Q2M3T9 481 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 CEACAM16Q2WEN9 425 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 SNAI3Q3KNW1 292 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms