RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CEP78Q5JTW2 689 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 RDH10Q8IZV5 341 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 PLPP7Q8NBV4 271 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 OR52N1Q8NH53 320 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 OR5AK2Q8NH90 309 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 GATAD2BQ8WXI9 593 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 RNF170Q96K19 258 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 RASSF4Q9H2L5 321 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 TRIM36Q9NQ86 728 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 HHLA2Q9UM44 414 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 ERGIC3Q9Y282 383 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 WIPI2Q9Y4P8 454 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 NPTNQ9Y639 398 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 TANC2Q9HCD6 1990 aa14.53□□□□□ -0.08
CLN3-217ENST00000565354 IGHV4-61A0A0C4DH41 118 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 LOC100289279A0A1B0GTE1 492 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 A6NIN4 97 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 CYB5R3P00387 301 aaPredicted RBP14.52□□□□□ -0.09
CLN3-217ENST00000565354 SERPINA3P01011 423 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 CDK1P06493 297 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 RPSAP08865 295 aaKnown RBP14.52□□□□□ -0.09
CLN3-217ENST00000565354 ZNF20P17024 532 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 HNF1AP20823 631 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 TGM4P49221 684 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 MPPED2Q15777 294 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 CLVS2Q5SYC1 327 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 RPL22L1Q6P5R6 122 aaKnown RBP14.52□□□□□ -0.09
CLN3-217ENST00000565354 OR5P3Q8WZ94 311 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 ITPKCQ96DU7 683 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 GAL3ST1Q99999 423 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 PPP1R3EQ9H7J1 279 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 GPR173Q9NS66 373 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 C1orf123Q9NWV4 160 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 DCAF16Q9NXF7 216 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 BLOC1S6Q9UL45 172 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 MEGF8Q7Z7M0 2845 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 MGAM2Q2M2H8 2515 aa14.52□□□□□ -0.09
CLN3-217ENST00000565354 LRP5LA4QPB2 252 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 TMEM210A6NLX4 147 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 TMEM212A6NML5 194 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 OR4C45A6NMZ5 311 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 E9PI62 339 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 TMEM178BH3BS89 294 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 ISG15P05161 165 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 C21orf33P30042 268 aaPredicted RBP14.51□□□□□ -0.09
CLN3-217ENST00000565354 GTF2A1P52655 376 aaPredicted RBP14.51□□□□□ -0.09
CLN3-217ENST00000565354 ZNF181Q2M3W8 571 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 CCDC58Q4VC31 144 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 RBM48Q5RL73 367 aaKnown RBP14.51□□□□□ -0.09
CLN3-217ENST00000565354 BOLLQ8N9W6 283 aaKnown RBP14.51□□□□□ -0.09
CLN3-217ENST00000565354 OR1M1Q8NGA1 313 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 OR13C3Q8NGS6 347 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 CCDC90BQ9GZT6 254 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 FKBP14Q9NWM8 211 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 BABAM2Q9NXR7 383 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 UBAP1Q9NZ09 502 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 RNF7Q9UBF6 113 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 PCDHB10Q9UN67 800 aa14.51□□□□□ -0.09
CLN3-217ENST00000565354 OR5B21A6NL26 309 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 ZNF732B4DXR9 585 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 GATBO75879 557 aaKnown RBP14.5□□□□□ -0.09
CLN3-217ENST00000565354 OCM2P0CE71 109 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 OCMP0CE72 109 aaPredicted RBP14.5□□□□□ -0.09
CLN3-217ENST00000565354 EEF1B2P24534 225 aaKnown RBP14.5□□□□□ -0.09
CLN3-217ENST00000565354 GPM6AP51674 278 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 WNT4P56705 351 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 TAS2R43P59537 309 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 BTG1P62324 171 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 GNG3P63215 75 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 HNRNPA0Q13151 305 aaKnown RBP14.5□□□□□ -0.09
CLN3-217ENST00000565354 CEACAM21Q3KPI0 293 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 Q6ZSR3 168 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 OR5A2Q8NGI9 324 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 CLDND2Q8NHS1 167 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 Q8TCH9 128 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 TSEN15Q8WW01 171 aaKnown RBP14.5□□□□□ -0.09
CLN3-217ENST00000565354 RNF166Q96A37 237 aaPredicted RBP14.5□□□□□ -0.09
CLN3-217ENST00000565354 C10orf35Q96D05 121 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 MSI2Q96DH6 328 aaKnown RBP14.5□□□□□ -0.09
CLN3-217ENST00000565354 MND1Q9BWT6 205 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 SLC7A11Q9UPY5 501 aa14.5□□□□□ -0.09
CLN3-217ENST00000565354 PPIAL4EA0A075B759 164 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 ANKRD61A6NGH8 418 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 PPIAL4DF5H284 164 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 RGS10O43665 173 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 PTBP3O95758 552 aaKnown RBP14.49□□□□□ -0.09
CLN3-217ENST00000565354 PPIAL4FP0DN26 164 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 RBMXP38159 391 aaKnown RBP14.49□□□□□ -0.09
CLN3-217ENST00000565354 PMELP40967 661 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 ZNF154Q13106 437 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 CDK5R1Q15078 307 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 CNN3Q15417 329 aaKnown RBP14.49□□□□□ -0.09
CLN3-217ENST00000565354 DMRTC1Q5HYR2 192 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 MUC20Q8N307 709 aaPredicted RBP14.49□□□□□ -0.09
CLN3-217ENST00000565354 SPICQ8N5J4 248 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 HPSE2Q8WWQ2 592 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 RAB39BQ96DA2 213 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 PDCD1LG2Q9BQ51 273 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 ERVK-18Q9QC07 812 aa14.49□□□□□ -0.09
CLN3-217ENST00000565354 DHDHQ9UQ10 334 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms