RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TCEANCQ8N8B7 351 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 OR10Z1Q8NGY1 313 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 SGMS2Q8NHU3 365 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 OR51E1Q8TCB6 317 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 GATAD2BQ8WXI9 593 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 TMIGD2Q96BF3 282 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 RAB3IPQ96QF0 476 aaPredicted RBP8.92□□□□□ -0.98
VPS39-208ENST00000564994 MROQ9BYG7 248 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 PBOV1Q9GZY1 135 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 ABCB9Q9NP78 766 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 NOX4Q9NPH5 578 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 GPR84Q9NQS5 396 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 ACOXLQ9NUZ1 547 aa8.92□□□□□ -0.98
VPS39-208ENST00000564994 VWFP04275 2813 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 A0A0U1RQK1 487 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 ZNF816-ZNF321PA0A0X1KG74 233 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 FAM181BA6NEQ2 426 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 ACOD1A6NK06 481 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 ZNF732B4DXR9 585 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 G3V2T6 193 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 SPRY1O43609 319 aaPredicted RBP8.91□□□□□ -0.98
VPS39-208ENST00000564994 NDUFB3O43676 98 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 ZNF254O75437 659 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 TTRP02766 147 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 MDKP21741 143 aaPredicted RBP8.91□□□□□ -0.98
VPS39-208ENST00000564994 MAP2K3P46734 347 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 GPM6AP51674 278 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 DLX1P56177 255 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 IL13RA1P78552 427 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 RELBQ01201 579 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 DGUOKQ16854 277 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 LCN1P1Q5VSP4 162 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 KDM4DQ6B0I6 523 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 FIP1L1Q6UN15 594 aaKnown RBP8.91□□□□□ -0.98
VPS39-208ENST00000564994 SHISA2Q6UWI4 295 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 ZNF788Q6ZQV5 615 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 PLEKHG7Q6ZR37 379 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 SLC36A1Q7Z2H8 476 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 VMO1Q7Z5L0 202 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 AMIGO2Q86SJ2 522 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 ZNF679Q8IYX0 411 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 PIP4P2Q8N4L2 257 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 Q8N7P7 452 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 ANGPTL6Q8NI99 470 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 FAM81AQ8TBF8 368 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 FAM71F1Q96KD3 344 aaPredicted RBP8.91□□□□□ -0.98
VPS39-208ENST00000564994 GAFA1Q96PS6 74 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 CNN2Q99439 309 aaKnown RBP8.91□□□□□ -0.98
VPS39-208ENST00000564994 DCTN5Q9BTE1 182 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 CHIAQ9BZP6 476 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 GABARAPL1Q9H0R8 117 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 OR51I2Q9H344 312 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 ADGRL4Q9HBW9 690 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 KRT84Q9NSB2 600 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 DNAJB11Q9UBS4 358 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 NUFIP1Q9UHK0 495 aaKnown RBP8.91□□□□□ -0.98
VPS39-208ENST00000564994 KPTNQ9Y664 436 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 TMEM14AQ9Y6G1 99 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 WNK1Q9H4A3 2382 aa8.91□□□□□ -0.98
VPS39-208ENST00000564994 IGKV1D-17A0A075B6S4 117 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 ATP6V1B1P15313 513 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 FAHP16930 419 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 POLR2IP36954 125 aaKnown RBP8.9□□□□□ -0.98
VPS39-208ENST00000564994 RIDAP52758 137 aaKnown RBP8.9□□□□□ -0.98
VPS39-208ENST00000564994 CXCR4P61073 352 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 GNG3P63215 75 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 RIPPLY1Q0D2K3 151 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 CEACAM21Q3KPI0 293 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 NXNL2Q5VZ03 156 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 ZNF322Q6U7Q0 402 aaPredicted RBP8.9□□□□□ -0.98
VPS39-208ENST00000564994 COMMD2Q86X83 199 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 SLC35F2Q8IXU6 374 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 C8orf46Q8TAG6 207 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 TMEM163Q8TC26 289 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 ASB17Q8WXJ9 295 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 LRTOMTQ8WZ04 291 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 DUS3LQ96G46 650 aaKnown RBP8.9□□□□□ -0.98
VPS39-208ENST00000564994 HIST1H2AAQ96QV6 131 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 IL4I1Q96RQ9 567 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 APOL4Q9BPW4 351 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 DNTTIP1Q9H147 329 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 SEMA6AQ9H2E6 1030 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 SIRT7Q9NRC8 400 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 ONECUT1Q9UBC0 465 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 NLKQ9UBE8 527 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 IKZF2Q9UKS7 526 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 PIGLQ9Y2B2 252 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 AP4S1Q9Y587 144 aa8.9□□□□□ -0.98
VPS39-208ENST00000564994 DSCAML1Q8TD84 2053 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 A0A1B0GTI1 187 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 A0A1B0GVI7 797 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 SLC22A31A6NKX4 558 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 OR2AT4A6NND4 320 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 POM121CA8CG34 1229 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 RNASEK-C17orf49H0YIS7 233 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 GPR37O15354 613 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 SIGLEC5O15389 551 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 DHRS3O75911 302 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 IGHV4-59P01825 116 aa8.89□□□□□ -0.99
VPS39-208ENST00000564994 ACAA1P09110 424 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms