RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 B3GNT2Q9NY97 397 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 TAS2R8Q9NYW2 309 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 FBLN5Q9UBX5 448 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 TBC1D24Q9ULP9 559 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 ING4Q9UNL4 249 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 MRPS28Q9Y2Q9 187 aaKnown RBP7.73□□□□□ -1.17
VPS39-207ENST00000563692 CACNG2Q9Y698 323 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 CELSR2Q9HCU4 2923 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 TRAV18A0A075B6X5 111 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 ZNF816-ZNF321PA0A0X1KG74 233 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 NAP1L6A6NFF2 107 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 GGT3PA6NGU5 568 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 J3QW42 95 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 SULT1C2O00338 296 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 PLA2G10O15496 165 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 GMDSO60547 372 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 RAD51DO75771 328 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 RBBP9O75884 186 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 NRASP01111 189 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 CBR1P16152 277 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 FAHP16930 419 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 CEACAM8P31997 349 aaPredicted RBP7.72□□□□□ -1.17
VPS39-207ENST00000563692 PRSS3P35030 304 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 PTH2RP49190 550 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 BCAP31P51572 246 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 FUT6P51993 359 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 ATP1B3P54709 279 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 FAM3AP98173 230 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 ZNF92Q03936 586 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 SNTB2Q13425 540 aaKnown RBP7.72□□□□□ -1.17
VPS39-207ENST00000563692 DYRK1AQ13627 763 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 GPR176Q14439 515 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 KISS1Q15726 138 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 UBE2V2Q15819 145 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 C1QTNF12Q5T7M4 302 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 PLET1Q6UQ28 207 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 GLIPR1L1Q6UWM5 242 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 LHFPL2Q6ZUX7 228 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 KRT74Q7RTS7 529 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 NRARPQ7Z6K4 114 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 MDP1Q86V88 176 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 LIX1LQ8IVB5 337 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 IZUMO1Q8IYV9 350 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 OR5AS1Q8N127 324 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 CSNK2A3Q8NEV1 391 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 SLC30A7Q8NEW0 376 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 OR4D6Q8NGJ1 314 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 OR2AE1Q8NHA4 323 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 DEDD2Q8WXF8 326 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 RNASE6Q93091 150 aaKnown RBP7.72□□□□□ -1.17
VPS39-207ENST00000563692 YIPF5Q969M3 257 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 STARD4Q96DR4 205 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 ITPKCQ96DU7 683 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 ZC3HAV1LQ96H79 300 aaKnown RBP7.72□□□□□ -1.17
VPS39-207ENST00000563692 HIST1H2AAQ96QV6 131 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 NUDT16L1Q9BRJ7 211 aaKnown RBP7.72□□□□□ -1.17
VPS39-207ENST00000563692 URM1Q9BTM9 101 aaKnown RBP7.72□□□□□ -1.17
VPS39-207ENST00000563692 REPIN1Q9BWE0 567 aaKnown RBP7.72□□□□□ -1.17
VPS39-207ENST00000563692 C11orf54Q9H0W9 315 aaPredicted RBP7.72□□□□□ -1.17
VPS39-207ENST00000563692 CST11Q9H112 138 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 CDH20Q9HBT6 801 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 ITGB1BP2Q9UKP3 347 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 EDARQ9UNE0 448 aa7.72□□□□□ -1.17
VPS39-207ENST00000563692 PHF3Q92576 2039 aaKnown RBP7.71□□□□□ -1.17
VPS39-207ENST00000563692 IGKV1-9A0A0C4DH69 117 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 hCG_38984A0A1B0GV85 526 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 FUOMA2VDF0 154 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 C5orf63A6NC05 138 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 LDLRAD4O15165 306 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 ORC5O43913 435 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 ZNF780AO75290 641 aaPredicted RBP7.71□□□□□ -1.18
VPS39-207ENST00000563692 TNFSF13O75888 250 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 LYZL6O75951 148 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 CD3GP09693 182 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 TUBG1P23258 451 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 FAUP35544 74 aaKnown RBP7.71□□□□□ -1.18
VPS39-207ENST00000563692 GDNFP39905 211 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 PTGFRP43088 359 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 ALDH3B1P43353 468 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 RFX2P48378 723 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 RBP2P50120 134 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 EFNB2P52799 333 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 MTCP1P56278 107 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 DGCR2P98153 550 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 HGFACQ04756 655 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 SSBP1Q04837 148 aaKnown RBP7.71□□□□□ -1.18
VPS39-207ENST00000563692 FOXF2Q12947 444 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 ARL6IP1Q15041 203 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 OR8B8Q15620 311 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 VWA1Q6PCB0 445 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 SEM1Q6ZVN7 128 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 MOB3CQ70IA8 216 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 GABRG1Q8N1C3 465 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 ZNF610Q8N9Z0 462 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 RELL2Q8NC24 303 aaPredicted RBP7.71□□□□□ -1.18
VPS39-207ENST00000563692 DUSP18Q8NEJ0 188 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 STEAP2Q8NFT2 490 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 FAM222BQ8WU58 562 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 TNFAIP8L1Q8WVP5 186 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 PIGCQ92535 297 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms