RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ZDHHC22Q8N966 263 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 DTWD2Q8NBA8 298 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 HSD17B11Q8NBQ5 300 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 ZNF417Q8TAU3 575 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 MMABQ96EY8 250 aaPredicted RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 PTCHD1Q96NR3 888 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 ZNF385AQ96PM9 386 aaKnown RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 PRTFDC1Q9NRG1 225 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 CUTCQ9NTM9 273 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 GSKIPQ9P0R6 139 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 MRM2Q9UI43 246 aaKnown RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 NUP210LQ5VU65 1888 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 CACNA1EQ15878 2313 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 VPS13AQ96RL7 3174 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 TRBV5-7A0A0A0MS05 114 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 C4orf47A7E2U8 309 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 AMBPP02760 352 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 MMP7P09237 267 aaPredicted RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 IFI6P09912 130 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 PGA4P0DJD7 388 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 PGA5P0DJD9 388 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 KLK2P20151 261 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 CEBPGP53567 150 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 UCP2P55851 309 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 CLN3Q13286 438 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 MAJINQ3KP22 176 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 C16orf54Q6UWD8 224 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 MFSD8Q8NHS3 518 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 MARCH1Q8TCQ1 289 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 SLC41A2Q96JW4 573 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 ACTR3CQ9C0K3 210 aaPredicted RBP11.78□□□□□ -0.52
CLK3-206ENST00000562078 FBXL17Q9UF56 701 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 SUSD2Q9UGT4 822 aa11.78□□□□□ -0.52
CLK3-206ENST00000562078 ADAMTS9Q9P2N4 1935 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 TLCD2A6NGC4 264 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 ELOA3DA6NLF2 546 aaPredicted RBP11.77□□□□□ -0.53
CLK3-206ENST00000562078 CA11O75493 328 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 NSA2O95478 260 aaKnown RBP11.77□□□□□ -0.53
CLK3-206ENST00000562078 IGKV1D-16P01601 117 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 OR4A8P0C604 315 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 PGA3P0DJD8 388 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 SLC6A6P31641 620 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 GABRA4P48169 554 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 PMPCAQ10713 525 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 ELOA3BQ3SY89 546 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 ARSJQ5FYB0 599 aaPredicted RBP11.77□□□□□ -0.53
CLK3-206ENST00000562078 RPUSD3Q6P087 351 aaKnown RBP11.77□□□□□ -0.53
CLK3-206ENST00000562078 ZNF676Q8N7Q3 588 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 SUMF2Q8NBJ7 301 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 ELOA3Q8NG57 546 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 HOXB13Q92826 284 aaPredicted RBP11.77□□□□□ -0.53
CLK3-206ENST00000562078 DNAJA3Q96EY1 480 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 DGAT2Q96PD7 388 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 LANCL2Q9NS86 450 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 ADAMTS20P59510 1910 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 H3BQ15 152 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 TAAR5O14804 337 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 SYT7O43581 403 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 SCAF4O95104 1147 aaKnown RBP11.77□□□□□ -0.53
CLK3-206ENST00000562078 HRH1P35367 487 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 GLO1Q04760 184 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 FAHD2BQ6P2I3 314 aaPredicted RBP11.77□□□□□ -0.53
CLK3-206ENST00000562078 ZNF595Q8IYB9 648 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 RNF128Q8TEB7 428 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 FAHD2AQ96GK7 314 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 VSTM2LQ96N03 204 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 DIRC2Q96SL1 478 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 LMF2Q9BU23 707 aaKnown RBP11.77□□□□□ -0.53
CLK3-206ENST00000562078 Q9N2J8 555 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 SERTAD3Q9UJW9 196 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 CLDN16Q9Y5I7 305 aa11.77□□□□□ -0.53
CLK3-206ENST00000562078 WDFY4Q6ZS81 3184 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 H0YL77 283 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 SLC17A2O00624 439 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 NGFRP08138 427 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 KIR3DL2P43630 455 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 CAMLGP49069 296 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 SPEM2Q0P670 501 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 FAM53BQ14153 422 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 GXYLT1Q4G148 440 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 FAM220AQ7Z4H9 259 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 ZNF679Q8IYX0 411 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 KDM8Q8N371 416 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 COMMD1Q8N668 190 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 CPEB3Q8NE35 698 aaKnown RBP11.76□□□□□ -0.53
CLK3-206ENST00000562078 NKD1Q969G9 470 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 SLCO5A1Q9H2Y9 848 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 PILRBQ9UKJ0 227 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 COL5A1P20908 1838 aaPredicted RBP11.76□□□□□ -0.53
CLK3-206ENST00000562078 ATXN7O15265 892 aaPredicted RBP11.76□□□□□ -0.53
CLK3-206ENST00000562078 GMFGO60234 142 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 DOK2O60496 412 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 CFIP05156 583 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 RPLP1P05386 114 aaKnown RBP11.76□□□□□ -0.53
CLK3-206ENST00000562078 METTL15P1P0C7V9 234 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 MDKP21741 143 aaPredicted RBP11.76□□□□□ -0.53
CLK3-206ENST00000562078 UBE2KP61086 200 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 IGLV3-21P80748 117 aaPredicted RBP11.76□□□□□ -0.53
CLK3-206ENST00000562078 NCR3LG1Q68D85 454 aa11.76□□□□□ -0.53
CLK3-206ENST00000562078 ETFRF1Q6IPR1 90 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms