RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 HAS2Q92819 552 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 WDR89Q96FK6 387 aaPredicted RBP6.38□□□□□ -1.39
VPS13C-206ENST00000558338 CNTNAP3BQ96NU0 1288 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 GNRHR2Q96P88 292 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 RBM24Q9BX46 236 aaKnown RBP6.38□□□□□ -1.39
VPS13C-206ENST00000558338 CNTNAP3Q9BZ76 1288 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 STRADBQ9C0K7 418 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 SDHAF2Q9NX18 166 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 PLEK2Q9NYT0 353 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 FBXO4Q9UKT5 387 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 TNFSF18Q9UNG2 199 aa6.38□□□□□ -1.39
VPS13C-206ENST00000558338 A0A0J9YW62 118 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 MFSD2BA6NFX1 497 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 SOCS1O15524 211 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 SGCEO43556 437 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 PMP2P02689 132 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 CSTBP04080 98 aaKnown RBP6.37□□□□□ -1.39
VPS13C-206ENST00000558338 PRKACBP22694 351 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 DLSTP36957 453 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 OR3A2P47893 321 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 PCBD1P61457 104 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 SSPNQ14714 243 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 MICBQ29980 383 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 SLC22A6Q4U2R8 563 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 RGS7BPQ6MZT1 257 aaPredicted RBP6.37□□□□□ -1.39
VPS13C-206ENST00000558338 HSD17B13Q7Z5P4 300 aaPredicted RBP6.37□□□□□ -1.39
VPS13C-206ENST00000558338 C1orf210Q8IVY1 113 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 INO80EQ8NBZ0 244 aaPredicted RBP6.37□□□□□ -1.39
VPS13C-206ENST00000558338 TMEM104Q8NE00 496 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 SEMA6DQ8NFY4 1073 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 OR5M9Q8NGP3 310 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 OR14L1PQ8NHC6 308 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 COQ8AQ8NI60 647 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 ST8SIA2Q92186 375 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 TECTBQ96PL2 329 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF385AQ96PM9 386 aaKnown RBP6.37□□□□□ -1.39
VPS13C-206ENST00000558338 SPACA5Q96QH8 159 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 NICN1Q9BSH3 213 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 NMES1Q9C002 83 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 RGCCQ9H4X1 137 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF319Q9P2F9 582 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 PADI1Q9ULC6 663 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 ALPK2Q86TB3 2170 aa6.37□□□□□ -1.39
VPS13C-206ENST00000558338 IGHV3-15A0A0B4J1V0 119 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 IGKV1-9A0A0C4DH69 117 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 OR5H15A6NDH6 313 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 OR2AT4A6NND4 320 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 STMND1H3BQB6 276 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 SMAD9O15198 467 aaKnown RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 EFSO43281 561 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 TUSC2O75896 110 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PET100P0DJ07 73 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 KLK2P20151 261 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 CARD18P57730 90 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 B3GALT5-AS1P59052 145 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ZXDAP98168 799 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 HYAL4Q2M3T9 481 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PLAC9Q5JTB6 97 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PHYHD1Q5SRE7 291 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 SFRP5Q5T4F7 317 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 RIPPLY2Q5TAB7 128 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF660Q6AZW8 331 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ABLIM2Q6H8Q1 611 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 H3F3CQ6NXT2 135 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ALKAL2Q6UX46 152 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 C17orf107Q6ZR85 190 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 Q7L0L9 218 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PPP1R32Q7Z5V6 425 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PEG10Q86TG7 708 aaKnown RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 EIF4E3Q8N5X7 224 aaKnown RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 OR2I1PQ8NGU4 316 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 OR2V1Q8NHB1 315 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 RHBDD1Q8TEB9 315 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PPP1R1CQ8WVI7 109 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ST8SIA4Q92187 359 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 MRGPRFQ96AM1 343 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 ARHGAP5-AS1Q96IT6 56 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 LYZL4Q96KX0 146 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 DDA1Q9BW61 102 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 SRXN1Q9BYN0 137 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 BANF2Q9H503 90 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 RAB18Q9NP72 206 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 TMEM38BQ9NVV0 291 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 TCFL5Q9UL49 500 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 BOKQ9UMX3 212 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 EDARQ9UNE0 448 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 GPR132Q9UNW8 380 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PIGLQ9Y2B2 252 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 LOC100509620A0A075B734 347 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 C5orf51A6NDU8 294 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 OR6C6A6NF89 314 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 DBX1A6NMT0 343 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 FOXI3A8MTJ6 420 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 FAM25EA8MYX2 175 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 PATE3B3GLJ2 98 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 J3QL48 77 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 RRP8O43159 456 aaKnown RBP6.36□□□□□ -1.39
VPS13C-206ENST00000558338 SPDEFO95238 335 aa6.36□□□□□ -1.39
VPS13C-206ENST00000558338 SFT2D2O95562 160 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms