RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 Q6ZSR3 168 aa14.32□□□□□ -0.12
SHMT2-231ENST00000557433 HIST1H2BAQ96A08 127 aa14.32□□□□□ -0.12
SHMT2-231ENST00000557433 C14orf79Q96F83 325 aa14.32□□□□□ -0.12
SHMT2-231ENST00000557433 OXGR1Q96P68 337 aa14.32□□□□□ -0.12
SHMT2-231ENST00000557433 S100A13Q99584 98 aa14.32□□□□□ -0.12
SHMT2-231ENST00000557433 CHRDQ9H2X0 955 aa14.32□□□□□ -0.12
SHMT2-231ENST00000557433 NSG2Q9Y328 171 aa14.32□□□□□ -0.12
SHMT2-231ENST00000557433 STRAPQ9Y3F4 350 aaKnown RBP14.32□□□□□ -0.12
SHMT2-231ENST00000557433 KIAA0100Q14667 2235 aaKnown RBP14.32□□□□□ -0.12
SHMT2-231ENST00000557433 IGKV1-9A0A0C4DH69 117 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 CRYM-AS1A6NIL9 109 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 TRAF3IP2O43734 574 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-231ENST00000557433 ACAA1P09110 424 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-231ENST00000557433 AGAP20933 346 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 CD27P26842 260 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 TMEM33P57088 247 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 EIF2S3LQ2VIR3 472 aaKnown RBP14.31□□□□□ -0.12
SHMT2-231ENST00000557433 RNF144BQ7Z419 303 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 CRB3Q9BUF7 120 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 PRR13Q9NZ81 148 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 LUZP4Q9P127 313 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 METTL1Q9UBP6 276 aaKnown RBP14.31□□□□□ -0.12
SHMT2-231ENST00000557433 ZMAT5Q9UDW3 170 aaKnown RBP14.31□□□□□ -0.12
SHMT2-231ENST00000557433 VDAC3Q9Y277 283 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 KCNIP3Q9Y2W7 256 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 AMDHD2Q9Y303 409 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 CHD7Q9P2D1 2997 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 A0A1W2PR77 199 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 H3BML4 177 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 SDCBPO00560 298 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-231ENST00000557433 SNCAP37840 140 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 GLP1RP43220 463 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 HNRNPKP61978 463 aaKnown RBP eCLIP14.31□□□□□ -0.12
SHMT2-231ENST00000557433 PLPPR5Q32ZL2 321 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 LANCL3Q6ZV70 420 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 FAM57BQ71RH2 274 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 PRSS58Q8IYP2 241 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 ZFP82Q8N141 532 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 OR5L2Q8NGL0 311 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 TCEAL3Q969E4 200 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 SHDQ96IW2 340 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 SMDT1Q9H4I9 107 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 RGCCQ9H4X1 137 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 V9GYS6 101 aa14.31□□□□□ -0.12
SHMT2-231ENST00000557433 TDRD6O60522 2096 aaKnown RBP14.3□□□□□ -0.12
SHMT2-231ENST00000557433 A0A1W2PP11 408 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 DUX1O43812 170 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 KNG1P01042 644 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 DANCRP0C864 163 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 SNRPEP62304 92 aaKnown RBP14.3□□□□□ -0.12
SHMT2-231ENST00000557433 SPEM2Q0P670 501 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 RHEBQ15382 184 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 APCDD1LQ8NCL9 501 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 NFAM1Q8NET5 270 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-231ENST00000557433 SEMA6DQ8NFY4 1073 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 MALSU1Q96EH3 234 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 PGAM5Q96HS1 289 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 AKR1E2Q96JD6 320 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 PCNX3Q9H6A9 2034 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 ZNF319Q9P2F9 582 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 SLCO1B1Q9Y6L6 691 aa14.3□□□□□ -0.12
SHMT2-231ENST00000557433 IGHV1OR21-1A0A087WYE8 117 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 EPOPA6NHQ4 379 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 ZNF726A6NNF4 738 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 DHRS3O75911 302 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 RAB1AP62820 205 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 GGNBP1Q5YKI7 109 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 OR2A2Q6IF42 318 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 LRTM2Q8N967 370 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 LFNGQ8NES3 379 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 HAS2Q92819 552 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 RELTQ969Z4 430 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 GALNT14Q96FL9 552 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 CLCC1Q96S66 551 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 NUDT22Q9BRQ3 303 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 GINS3Q9BRX5 216 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 PBDC1Q9BVG4 233 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 CHST5Q9GZS9 411 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 RPS10P5Q9NQ39 176 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 HDGFL3Q9Y3E1 203 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 IGLV3-12A0A075B6K2 115 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 A0A1B0GW64 132 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 C9JQL5 133 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 RER1O15258 196 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 GPR137BO60478 399 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 OR8U9P0C7N5 309 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 SLC2A1P11166 492 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 FOLR1P15328 257 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 GUCA1AP43080 201 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-231ENST00000557433 ACY1Q03154 408 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 HGFACQ04756 655 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 SLC38A9Q8NBW4 561 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 OR8U1Q8NH10 309 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 ZNF2Q9BSG1 426 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-231ENST00000557433 LMAN1LQ9HAT1 526 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 SEBOXQ9HB31 216 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-231ENST00000557433 KLRF1Q9NZS2 232 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 PADI1Q9ULC6 663 aa14.29□□□□□ -0.12
SHMT2-231ENST00000557433 AGPAT2O15120 278 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 EFNA2O43921 213 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms