RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 PIPP12273 146 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 FAHP16930 419 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 PMELP40967 661 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 CNN3Q15417 329 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 MICBQ29980 383 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 DCAF12L2Q5VW00 463 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 TEX36Q5VZQ5 186 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 WDR82Q6UXN9 313 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 TMPRSS11AQ6ZMR5 421 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 WDR86Q86TI4 376 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 GCSAMQ8N6F7 178 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 OR14K1Q8NGZ2 314 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 OR2G2Q8NGZ5 317 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 C4orf36Q96KX1 117 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 TMEM246Q9BRR3 403 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 CHST5Q9GZS9 411 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 DNTTIP1Q9H147 329 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 LPAR2Q9HBW0 351 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 NEK6Q9HC98 313 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 FGF20Q9NP95 211 aaPredicted RBP12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 CHCHD3Q9NX63 227 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 ERVK13-1Q9NX77 482 aa12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 CNOT2Q9NZN8 540 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 EXOSC1Q9Y3B2 195 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-207ENST00000554051 A0A1B0GTI1 187 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 EFCAB10A6NFE3 127 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 ANKRD61A6NGH8 418 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 NKX6-3A6NJ46 265 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 TMEM212A6NML5 194 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 SRRM5B3KS81 715 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 MAGEB4O15481 346 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 LHBP01229 141 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 HSPA13P48723 471 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 PITPNBP48739 271 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 GBX2P52951 348 aaPredicted RBP12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 GNB2P62879 340 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 CSNK2BP67870 215 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 BTNL3Q6UXE8 466 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 ZNF573Q86YE8 665 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 OR52I1Q8NGK6 324 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 ZNF671Q8TAW3 534 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 PELI1Q96FA3 418 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 COMMD4Q9H0A8 199 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 CLN8Q9UBY8 286 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 HHLA2Q9UM44 414 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 DIMT1Q9UNQ2 313 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 SLC7A11Q9UPY5 501 aa12.04□□□□□ -0.48
CCDC88C-207ENST00000554051 MALRD1Q5VYJ5 2156 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 ZNF732B4DXR9 585 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 J3QLW9 94 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 J3QT63 122 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 CDIPTO14735 213 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 WNT2P09544 360 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 ZNF19P17023 458 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 SRP14P37108 136 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 PSMB10P40306 273 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 TGM4P49221 684 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 GPM6AP51674 278 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 OR12D2P58182 307 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 CCDC58Q4VC31 144 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 CD276Q5ZPR3 534 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 MOB3CQ70IA8 216 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 SLC36A1Q7Z2H8 476 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 PRSS35Q8N3Z0 413 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 CNIH3Q8TBE1 160 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 MRI1Q9BV20 369 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 OR51I2Q9H344 312 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 AMBNQ9NP70 447 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 RASL12Q9NYN1 266 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 ERVK-18Q9QC07 812 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 KAAG1Q9UBP8 84 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 DNAJB11Q9UBS4 358 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 MYRFQ9Y2G1 1151 aa12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 CAB39Q9Y376 341 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 SONP18583 2426 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-207ENST00000554051 GPR37O15354 613 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 CLIC3O95833 236 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 ZNF20P17024 532 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 CD80P33681 288 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 KIR3DL2P43630 455 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 LCN2P80188 198 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 RIPK1Q13546 671 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 ALKBH1Q13686 389 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 SMIM21Q3B7S5 101 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 CEP78Q5JTW2 689 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 FAHD2BQ6P2I3 314 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 ZNF826PQ6ZT77 177 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 ZNF771Q7L3S4 317 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 LHFPL3Q86UP9 236 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 FAM90A1Q86YD7 464 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 C11orf53Q8IXP5 236 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 ZNF676Q8N7Q3 588 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 BOLLQ8N9W6 283 aaKnown RBP12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 SCCPDHQ8NBX0 429 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 FBLIM1Q8WUP2 373 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 TFAP2CQ92754 450 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 SPSB1Q96BD6 273 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 FAHD2AQ96GK7 314 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 PKIBQ9C010 78 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 AASSQ9UDR5 926 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms