RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 OR51I2Q9H344 312 aa8.53□□□□□ -1.04
CCDC88C-206ENST00000553437 MOB1AQ9H8S9 216 aa8.53□□□□□ -1.04
CCDC88C-206ENST00000553437 ERVK-18Q9QC07 812 aa8.53□□□□□ -1.04
CCDC88C-206ENST00000553437 ZNF69Q9UC07 566 aa8.53□□□□□ -1.04
CCDC88C-206ENST00000553437 OR52A1Q9UKL2 312 aa8.53□□□□□ -1.04
CCDC88C-206ENST00000553437 NUP50Q9UKX7 468 aa8.53□□□□□ -1.04
CCDC88C-206ENST00000553437 ARHGAP32A7KAX9 2087 aa8.53□□□□□ -1.04
CCDC88C-206ENST00000553437 A0A1B0GW55 424 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 METTL15A6NJ78 407 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 J3QRE1 110 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DVL1O14640 695 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 ENTPD6O75354 484 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 SULT1C4O75897 302 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DHRS3O75911 302 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DUX4L2P0CJ85 424 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DUX4L3P0CJ86 424 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DUX4L4P0CJ87 422 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DUX4L5P0CJ88 424 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DUX4L6P0CJ89 424 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DUX4L7P0CJ90 424 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 IGHV4-38-2P0DP08 117 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 FAHP16930 419 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 GABRB1P18505 474 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 TGM4P49221 684 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 GPM6AP51674 278 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 ISL1P61371 349 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF85Q03923 595 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 OCLNQ16625 522 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 MICBQ29980 383 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 CEACAM21Q3KPI0 293 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 ARMCX4Q5H9R4 360 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DMRTC1Q5HYR2 192 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 WDR38Q5JTN6 314 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 CEP78Q5JTW2 689 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 BCL2L15Q5TBC7 163 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DUX4L9Q6RFH8 374 aaPredicted RBP8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 CATSPERDQ86XM0 798 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 BCL6BQ8N143 479 aaPredicted RBP8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 ZDHHC22Q8N966 263 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 OR5A2Q8NGI9 324 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 OR14K1Q8NGZ2 314 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 ZFAND2BQ8WV99 257 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 RORBQ92753 470 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 RFKQ969G6 155 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 C12orf43Q96C57 262 aaKnown RBP8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 TECTBQ96PL2 329 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 CCL13Q99616 98 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 SUCNR1Q9BXA5 334 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 WDR13Q9H1Z4 485 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 ESM1Q9NQ30 184 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 DUX4Q9UBX2 424 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 AASSQ9UDR5 926 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 SLC22A13Q9Y226 551 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 PIGLQ9Y2B2 252 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 SNX5Q9Y5X3 404 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 V9GYS6 101 aa8.52□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF732B4DXR9 585 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 P2RY10O00398 339 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 AKR7A2O43488 359 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 ENSAO43768 121 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 MTRF1O75570 445 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 RHBDL1O75783 438 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 RPP14O95059 124 aaKnown RBP8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 PLATP00750 562 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 KRT8P05787 483 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 MMP9P14780 707 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 CCL1P22362 96 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 FPR2P25090 351 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 ATP6V1E1P36543 226 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 MTNR1AP48039 350 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 GNG3P63215 75 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 C11orf91Q3C1V1 193 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 ATPAF1Q5TC12 328 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 CD276Q5ZPR3 534 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 STUMQ69YW2 141 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 C9orf139Q6ZV77 190 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 KCTD8Q6ZWB6 473 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 MOB3CQ70IA8 216 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 DOK3Q7L591 496 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 THAP5Q7Z6K1 395 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 COMMD2Q86X83 199 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 PQLC1Q8N2U9 271 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 FGFRL1Q8N441 504 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 BPIFB2Q8N4F0 458 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 YIPF7Q8N8F6 280 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 OR10H4Q8NGA5 316 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 OR5T2Q8NGG2 359 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 ZNF48Q96MX3 618 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 HIST1H2AAQ96QV6 131 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 C9orf16Q9BUW7 83 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 IMPAD1Q9NX62 359 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 ENPP5Q9UJA9 477 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 GTF2A1LQ9UNN4 478 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 ORC6Q9Y5N6 252 aa8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 SOX21Q9Y651 276 aaPredicted RBP8.51□□□□□ -1.05
CCDC88C-206ENST00000553437 IGHV3OR16-10A0A075B7F0 116 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 OR5B21A6NL26 309 aa8.5□□□□□ -1.05
CCDC88C-206ENST00000553437 DHRS7CA6NNS2 312 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms