RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 BEST4Q8NFU0 473 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 OR11H7Q8NGC8 314 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 OR51T1Q8NGJ9 327 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 BORCS8Q96FH0 119 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 REPIN1Q9BWE0 567 aaKnown RBP22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 BEX1Q9HBH7 125 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 GPN1Q9HCN4 374 aaPredicted RBP22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 SLC7A11Q9UPY5 501 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 FREM1Q5H8C1 2179 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 FOXI3A8MTJ6 420 aaPredicted RBP22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 HPXP02790 462 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 FCER2P06734 321 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 SULT1A3P0DMM9 295 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 SULT1A4P0DMN0 295 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 RAD52P43351 418 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 FUT6P51993 359 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 GNG2P59768 71 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 MALLQ13021 153 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 PLAC9Q5JTB6 97 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 TFAP2EQ6VUC0 442 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 FAM214BQ7L5A3 538 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 NUDCD2Q8WVJ2 157 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 WNT2BQ93097 391 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 METTL9Q9H1A3 318 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 ANAPC10Q9UM13 185 aa22.81■■□□□ 1.24
CCDC88C-205ENST00000553403 FAM230AA0A1W2PPH8 454 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 SNRPGP15A8MWD9 76 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 PYCARD-AS1I3L0S3 204 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 MFNGO00587 321 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 SSX5O60225 188 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 WISP2O76076 250 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 ZNF735P0CB33 412 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 ASCL4Q6XD76 172 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 SLC25A21Q9BQT8 299 aaPredicted RBP22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 OPA3Q9H6K4 179 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 IFT46Q9NQC8 304 aa22.8■■□□□ 1.24
CCDC88C-205ENST00000553403 SSNA1O43805 119 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 TMEM225BP0DP42 221 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 TBPP20226 339 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 SERPINA2P20848 420 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 CCNOP22674 350 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 CPT2P23786 658 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 MPZP25189 248 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 ERP29P30040 261 aaKnown RBP22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 APLNRP35414 380 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 EIF2S3P41091 472 aaKnown RBP22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 ATP1B3P54709 279 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 ARL6IP1Q15041 203 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 HIKESHIQ53FT3 197 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 Q6ZS92 163 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 MOB3CQ70IA8 216 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 SNIP1Q8TAD8 396 aaKnown RBP22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 TAAR6Q96RI8 345 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 TINAGL1Q9GZM7 467 aaPredicted RBP22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 SCP2D1Q9UJQ7 156 aa22.79■■□□□ 1.24
CCDC88C-205ENST00000553403 AHRRA9YTQ3 701 aa22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 DISC1C4P0D8 188 aa22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 M0QYG6 137 aa22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 CNOT4O95628 575 aaKnown RBP22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 ANXA7P20073 488 aaKnown RBP22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 GZMKP49863 264 aa22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 MRPS15P82914 257 aaKnown RBP22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 SLC36A1Q7Z2H8 476 aa22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 CCDC36Q8IYA8 594 aa22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 KCNK7Q9Y2U2 307 aa22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 RTTNQ86VV8 2226 aa22.78■■□□□ 1.24
CCDC88C-205ENST00000553403 IGKV1-27A0A075B6S5 117 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 OR14I1A6ND48 311 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 AMY2AP04746 511 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 ANXA3P12429 323 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 NAT1P18440 290 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 CBX5P45973 191 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 PRSS12P56730 875 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 TGFBR3Q03167 851 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 ZMYND11Q15326 602 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 BPIFB2Q8N4F0 458 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 OR10K1Q8NGX5 313 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 PIGCQ92535 297 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 ARHGAP5-AS1Q96IT6 56 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 ELL3Q9HB65 397 aaPredicted RBP22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 SLC2A8Q9NY64 477 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 PAIP2BQ9ULR5 123 aaKnown RBP22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 USP24Q9UPU5 2620 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 CA11O75493 328 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 CCL2P13500 99 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 GK2Q14410 553 aaPredicted RBP22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 RNASE10Q5GAN6 216 aaKnown RBP22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 PLCXD3Q63HM9 321 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 ZNF626Q68DY1 528 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 MRPL21Q7Z2W9 205 aaKnown RBP22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 SEC22CQ9BRL7 303 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 ALX4Q9H161 411 aaPredicted RBP22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 ZNF222Q9UK12 451 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 PLEKHA6Q9Y2H5 1048 aa22.77■■□□□ 1.24
CCDC88C-205ENST00000553403 KMT2BQ9UMN6 2715 aaPredicted RBP22.77■■□□□ 1.23
CCDC88C-205ENST00000553403 TNRC6AQ8NDV7 1962 aaKnown RBP22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 MEIKINA0A087WXM9 373 aa22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 CREBL2O60519 120 aaPredicted RBP22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 ZNF780AO75290 641 aaPredicted RBP22.76■■□□□ 1.23
CCDC88C-205ENST00000553403 RTL6Q6ICC9 239 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms