RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NMNAT2Q9BZQ4 307 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 ADAM10O14672 748 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 MSTNO14793 375 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 SNAPINO95295 136 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 VSIG8P0DPA2 414 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 OR1F12Q8NHA8 337 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 CXorf58Q96LI9 332 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 ADAM19Q9H013 955 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 CTDSPLO15194 276 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 EDDM3AQ14507 147 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.88□□□□□ -0.19
CUX1-211ENST00000546411 OR6K3Q8NGY3 331 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 FBXW5Q969U6 566 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 FER1L6-AS2Q96M78 137 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 CNTNAP3Q9BZ76 1288 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 H3BP45 60 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 DXOO77932 396 aaKnown RBP13.88□□□□□ -0.19
CUX1-211ENST00000546411 IGF2P01344 180 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 DCAF12L2Q5VW00 463 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 GCNT2Q8N0V5 402 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 PP6455Q8WZ26 134 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 EDARQ9UNE0 448 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 A0A1B0GTQ1 180 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 C1orf196B1AJZ1 125 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 PPIAP62937 165 aaKnown RBP13.88□□□□□ -0.19
CUX1-211ENST00000546411 ZNF674Q2M3X9 581 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 TMEM268Q5VZI3 342 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 ENY2Q9NPA8 101 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 SNRNP200O75643 2136 aaKnown RBP13.88□□□□□ -0.19
CUX1-211ENST00000546411 C9orf170A2RU37 121 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 ERVH48-1M5A8F1 160 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 TTRP02766 147 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 RPL12P30050 165 aaKnown RBP13.88□□□□□ -0.19
CUX1-211ENST00000546411 GPM6AP51674 278 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 WDR5BQ86VZ2 330 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 DTWD2Q8NBA8 298 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 CPNE4Q96A23 557 aaPredicted RBP13.88□□□□□ -0.19
CUX1-211ENST00000546411 CDX2Q99626 313 aaPredicted RBP13.88□□□□□ -0.19
CUX1-211ENST00000546411 RTN4RQ9BZR6 473 aa13.88□□□□□ -0.19
CUX1-211ENST00000546411 ESPL1Q14674 2120 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 ST8SIA3O43173 380 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 CDC14BO60729 498 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 VSIG10L2P0DP72 767 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 RPL23AP62750 156 aaKnown RBP13.87□□□□□ -0.19
CUX1-211ENST00000546411 MRPS34P82930 218 aaKnown RBP13.87□□□□□ -0.19
CUX1-211ENST00000546411 SLC10A1Q14973 349 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 TSPO2Q5TGU0 170 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 BPHLQ86WA6 291 aaPredicted RBP13.87□□□□□ -0.19
CUX1-211ENST00000546411 RNF133Q8WVZ7 376 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 UQCC2Q9BRT2 126 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 SLC17A5Q9NRA2 495 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 A0A087WZY1 265 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 A0A1W2PR77 199 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 ATP6V1G2-DDX39BF2Z307 99 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 DHRS3O75911 302 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 CFDP00746 253 aaPredicted RBP13.87□□□□□ -0.19
CUX1-211ENST00000546411 ARF1P84077 181 aaKnown RBP13.87□□□□□ -0.19
CUX1-211ENST00000546411 PEA15Q15121 130 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 C3AR1Q16581 482 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 CLEC9AQ6UXN8 241 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 ARHGEF39Q8N4T4 335 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 TMEM104Q8NE00 496 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 OR6X1Q8NH79 312 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 FBXO7Q9Y3I1 522 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 SIRPB1O00241 398 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 TIMM8AO60220 97 aaPredicted RBP13.87□□□□□ -0.19
CUX1-211ENST00000546411 PDGFBP01127 241 aaPredicted RBP13.87□□□□□ -0.19
CUX1-211ENST00000546411 OSR2Q8N2R0 312 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 SPICQ8N5J4 248 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 SUMF2Q8NBJ7 301 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 RGP1Q92546 391 aaPredicted RBP13.87□□□□□ -0.19
CUX1-211ENST00000546411 SGK3Q96BR1 496 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 KLHDC3Q9BQ90 382 aa13.87□□□□□ -0.19
CUX1-211ENST00000546411 PLSCR5A0PG75 271 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 H3BUI4 141 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 RAB27BO00194 218 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 OR13C7P0DN81 318 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 CNR1P21554 472 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 MPLP40238 635 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 MMP16P51512 607 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 PABPC1L2AQ5JQF8 200 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 NAA40Q86UY6 237 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 ZFP82Q8N141 532 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 ARRDC1Q8N5I2 433 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 PLPPR2Q96GM1 343 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 ESRP2Q9H6T0 727 aaKnown RBP13.86□□□□□ -0.19
CUX1-211ENST00000546411 UCK1Q9HA47 277 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 PRDM6Q9NQX0 595 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 A0A1W2PPC1 479 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 AKR1C3P42330 323 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 RAB1AP62820 205 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 RAC1P63000 192 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 RAB32Q13637 225 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 DPPA2Q7Z7J5 298 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 OR13C8Q8NGS7 320 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 OR2Y1Q8NGV0 311 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 ABHD3Q8WU67 409 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 GPX7Q96SL4 187 aaPredicted RBP13.86□□□□□ -0.19
CUX1-211ENST00000546411 GDF15Q99988 308 aa13.86□□□□□ -0.19
CUX1-211ENST00000546411 GNG12Q9UBI6 72 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms