RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RNF133Q8WVZ7 376 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 DYRK2Q92630 601 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 NIPSNAP1Q9BPW8 284 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 FGF23Q9GZV9 251 aaPredicted RBP6.96□□□□□ -1.3
USP28-215ENST00000545608 TLNRD1Q9H1K6 362 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 SEMA6AQ9H2E6 1030 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 TOR3AQ9H497 397 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 DCLRE1BQ9H816 532 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 CMC2Q9NRP2 79 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 DNAJC27Q9NZQ0 273 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 DNAJB11Q9UBS4 358 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 SAMHD1Q9Y3Z3 626 aaKnown RBP6.96□□□□□ -1.3
USP28-215ENST00000545608 RNF114Q9Y508 228 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 KPTNQ9Y664 436 aa6.96□□□□□ -1.3
USP28-215ENST00000545608 MEGF8Q7Z7M0 2845 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 A0A1B0GVI7 797 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 A0A1W2PRD5 423 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 A0A1W2PRF3 423 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 A0A1W2PRM7 423 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 RIIAD1A6NNX1 92 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 RNASEK-C17orf49H0YIS7 233 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 NDUFB3O43676 98 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 GLCEO94923 617 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 IFNGP01579 166 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 TFF1P04155 84 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 SELLP14151 372 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 ZNF3P17036 446 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 NAT1P18440 290 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 OPRL1P41146 370 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 NAA10P41227 235 aaPredicted RBP6.95□□□□□ -1.3
USP28-215ENST00000545608 ECI1P42126 302 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 BLVRAP53004 296 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 PROK1P58294 105 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 GMFBP60983 142 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 RPL15P61313 204 aaKnown RBP6.95□□□□□ -1.3
USP28-215ENST00000545608 IKZF1Q13422 519 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 TAF9Q16594 264 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 GFOD2Q3B7J2 385 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 LCE2AQ5TA79 106 aaPredicted RBP6.95□□□□□ -1.3
USP28-215ENST00000545608 ATPAF1Q5TC12 328 aaPredicted RBP6.95□□□□□ -1.3
USP28-215ENST00000545608 ASPHD2Q6ICH7 369 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 LCN8Q6JVE9 175 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 Q6ZSV7 163 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 SLC36A1Q7Z2H8 476 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 TIGD4Q8IY51 512 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 GALNT4Q8N4A0 578 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 Q8N7P7 452 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 OR10G2Q8NGC3 310 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 FAM81AQ8TBF8 368 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 DNAJC9Q8WXX5 260 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 RPL3LQ92901 407 aaKnown RBP6.95□□□□□ -1.3
USP28-215ENST00000545608 OTULINQ96BN8 352 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 PGAM5Q96HS1 289 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 LYZL4Q96KX0 146 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 INTS14Q96SY0 518 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 MICU1Q9BPX6 476 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 DCTN5Q9BTE1 182 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 PAPOLGQ9BWT3 736 aaKnown RBP6.95□□□□□ -1.3
USP28-215ENST00000545608 WDR13Q9H1Z4 485 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 OR10A2Q9H208 303 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 OR51V1Q9H2C8 321 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 MAGIXQ9H6Y5 334 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 REEP1Q9H902 201 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 SP140LQ9H930 580 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 SIRT7Q9NRC8 400 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 SNTG1Q9NSN8 517 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 NDE1Q9NXR1 346 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 ONECUT1Q9UBC0 465 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 PRPF19Q9UMS4 504 aaKnown RBP6.95□□□□□ -1.3
USP28-215ENST00000545608 TRRAPQ9Y4A5 3859 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 WNK1Q9H4A3 2382 aa6.95□□□□□ -1.3
USP28-215ENST00000545608 MAGEA13PA6NCF6 341 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 ZNF850A8MQ14 1090 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 SELENOFO60613 162 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 TIPRLO75663 272 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 CLPXO76031 633 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 APOC1P02654 83 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 H2BFMP0C1H6 154 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 CFL1P23528 166 aaKnown RBP6.94□□□□□ -1.3
USP28-215ENST00000545608 ACKR3P25106 362 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 GNALP38405 381 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 VHLP40337 213 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 IL5RAQ01344 420 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 PRDX4Q13162 271 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 KLRD1Q13241 179 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 TRIM25Q14258 630 aaKnown RBP6.94□□□□□ -1.3
USP28-215ENST00000545608 DGUOKQ16854 277 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 STUMQ69YW2 141 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 METAP1DQ6UB28 335 aaPredicted RBP6.94□□□□□ -1.3
USP28-215ENST00000545608 CD300LDQ6UXZ3 194 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 ASRGL1Q7L266 308 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 SHFQ7M4L6 423 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 DHFR2Q86XF0 187 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 PNKDQ8N490 385 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 ZSCAN4Q8NAM6 433 aaPredicted RBP6.94□□□□□ -1.3
USP28-215ENST00000545608 CSNK2A3Q8NEV1 391 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 OR52H1Q8NGJ2 320 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 OR10Z1Q8NGY1 313 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 TEX47Q8TBZ9 253 aa6.94□□□□□ -1.3
USP28-215ENST00000545608 THEM6Q8WUY1 208 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms