RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 OR4M1Q8NGD0 313 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 HIST1H2AAQ96QV6 131 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 SRRQ9GZT4 340 aa15.2■□□□□ 0.02
CLIP1-215ENST00000541108 NOP16Q9Y3C1 178 aaKnown RBP15.2■□□□□ 0.02
CLIP1-215ENST00000541108 FAM230AA0A1W2PPH8 454 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 NKX2-6A6NCS4 301 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 OR3A4PP47883 348 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 UQCRFS1P47985 274 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 RPS23P62266 143 aaKnown RBP15.19■□□□□ 0.02
CLIP1-215ENST00000541108 QRFPP83859 136 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 SNTB2Q13425 540 aaKnown RBP15.19■□□□□ 0.02
CLIP1-215ENST00000541108 FAM189A2Q15884 450 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 GLIPR1L1Q6UWM5 242 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 OR2W3Q7Z3T1 314 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 RNF144BQ7Z419 303 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 BHLHE23Q8NDY6 225 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 NUP37Q8NFH4 326 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 ITPKCQ96DU7 683 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 ZC3HAV1LQ96H79 300 aaKnown RBP15.19■□□□□ 0.02
CLIP1-215ENST00000541108 GPR160Q9UJ42 338 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 PURGQ9UJV8 347 aaKnown RBP15.19■□□□□ 0.02
CLIP1-215ENST00000541108 RAB22AQ9UL26 194 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 TMEM14DPA8MWL7 114 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 VSIG8P0DPA2 414 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 ZNF250P15622 560 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 ZP1P60852 638 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 PITPNAQ00169 270 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 PYHIN1Q6K0P9 492 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 KCNG3Q8TAE7 436 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 C15orf40Q8WUR7 153 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 OR5P3Q8WZ94 311 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 C1orf147Q96MC9 270 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-215ENST00000541108 BBC3Q96PG8 261 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-215ENST00000541108 S100A13Q99584 98 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 SDHCQ99643 169 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-215ENST00000541108 SLC22A4Q9H015 551 aa15.19■□□□□ 0.02
CLIP1-215ENST00000541108 DIDO1Q9BTC0 2240 aaKnown RBP15.18■□□□□ 0.02
CLIP1-215ENST00000541108 IGKV1-27A0A075B6S5 117 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 A0A0A6YYH2 397 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 PQLC2LA1A4F0 135 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 DPRXA6NFQ7 191 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 A6NJ64 397 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 OR5B21A6NL26 309 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 LILRA1O75019 489 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 MPV17P39210 176 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 FABP6P51161 128 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 ASCL4Q6XD76 172 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 CDH24Q86UP0 819 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 PXT1Q8NFP0 134 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 OR8G5Q8NG78 346 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 TNFAIP8L1Q8WVP5 186 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 HPSE2Q8WWQ2 592 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 CST11Q9H112 138 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 ESRP2Q9H6T0 727 aaKnown RBP15.18■□□□□ 0.02
CLIP1-215ENST00000541108 DIABLOQ9NR28 239 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 CRIM1Q9NZV1 1036 aa15.18■□□□□ 0.02
CLIP1-215ENST00000541108 HIVEP3Q5T1R4 2406 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 METTL21EPA6NDL7 271 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 XRCC3O43542 346 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 ZNF780AO75290 641 aaPredicted RBP15.17■□□□□ 0.02
CLIP1-215ENST00000541108 CTAG2O75638 210 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 UPK1BO75841 260 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 CA6P23280 308 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 MNDAP41218 407 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 MMP15P51511 669 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 TFF3Q07654 80 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 GPR176Q14439 515 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 CDSNQ15517 529 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 ZNF181Q2M3W8 571 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 ZSCAN4Q8NAM6 433 aaPredicted RBP15.17■□□□□ 0.02
CLIP1-215ENST00000541108 TMEM171Q8WVE6 324 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 RFT1Q96AA3 541 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 PHF21AQ96BD5 680 aa15.17■□□□□ 0.02
CLIP1-215ENST00000541108 A0A0G2JMP0 313 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 A0A0X1KG70 313 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 ATP6V1G2-DDX39BF2Z307 99 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 SCGNO76038 276 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 IGHV3-13P01766 116 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 EFNB2P52799 333 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 GNG3P63215 75 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 PLA2G7Q13093 441 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 PDZK1IP1Q13113 114 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 UNC119Q13432 240 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 PYDC2Q56P42 97 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 RAB12Q6IQ22 244 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 OR4M2Q8NGB6 313 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 OR5D18Q8NGL1 313 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 RADILQ96JH8 1075 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 RNF170Q96K19 258 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 TMEM100Q9NV29 134 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 CADP27708 2225 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 IGLV3-9A0A075B6K5 115 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 A0A1B0GWJ7 208 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 ABCD4O14678 606 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 CTDSPLO15194 276 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 CLDN14O95500 239 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 TMEM225BP0DP42 221 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 CDK2P24941 298 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 BSPH1Q075Z2 132 aa15.16■□□□□ 0.02
CLIP1-215ENST00000541108 ALKBH6Q3KRA9 238 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms