RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ORC6Q9Y5N6 252 aa12.28□□□□□ -0.44
USP28-204ENST00000537642 SNX5Q9Y5X3 404 aa12.28□□□□□ -0.44
USP28-204ENST00000537642 IGHV3OR16-10A0A075B7F0 116 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 A0A1B0GTI1 187 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 ZNF732B4DXR9 585 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 TMPRSS2O15393 492 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 ENSAO43768 121 aaKnown RBP12.27□□□□□ -0.45
USP28-204ENST00000537642 DHRS3O75911 302 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 RPP14O95059 124 aaKnown RBP12.27□□□□□ -0.45
USP28-204ENST00000537642 KRT8P05787 483 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 GPM6AP51674 278 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 GMFBP60983 142 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 CEACAM21Q3KPI0 293 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 WDR38Q5JTN6 314 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 ZBTB37Q5TC79 503 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 CD276Q5ZPR3 534 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 MOB3CQ70IA8 216 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 THAP5Q7Z6K1 395 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 FGFRL1Q8N441 504 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 YIPF7Q8N8F6 280 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 ZDHHC22Q8N966 263 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 ZFAND2BQ8WV99 257 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 RFKQ969G6 155 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 RAB3IPQ96QF0 476 aaPredicted RBP12.27□□□□□ -0.45
USP28-204ENST00000537642 HIST1H2AAQ96QV6 131 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 MBOAT4Q96T53 435 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 CCL13Q99616 98 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 WDR13Q9H1Z4 485 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 OR51I2Q9H344 312 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 IMPAD1Q9NX62 359 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 ENPP5Q9UJA9 477 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 SLC22A13Q9Y226 551 aa12.27□□□□□ -0.45
USP28-204ENST00000537642 METTL15A6NJ78 407 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 P2RY10O00398 339 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 DVL1O14640 695 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 AKR7A2O43488 359 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 ENTPD6O75354 484 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 MTRF1O75570 445 aaKnown RBP12.26□□□□□ -0.45
USP28-204ENST00000537642 AMY2BP19961 511 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 ATP6V1E1P36543 226 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 FGF12P61328 243 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 SNRPGP62308 76 aaKnown RBP12.26□□□□□ -0.45
USP28-204ENST00000537642 GNG3P63215 75 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 ZNF85Q03923 595 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 SLC25A30Q5SVS4 291 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 PLCXD3Q63HM9 321 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 STUMQ69YW2 141 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 Q6ZSR3 168 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 CATSPERDQ86XM0 798 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 PQLC1Q8N2U9 271 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 SIGLECL1Q8N7X8 197 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 OR5T2Q8NGG2 359 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 OR5A2Q8NGI9 324 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 OR14K1Q8NGZ2 314 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 RORBQ92753 470 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 C12orf43Q96C57 262 aaKnown RBP12.26□□□□□ -0.45
USP28-204ENST00000537642 JMJD8Q96S16 334 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 SLC29A1Q99808 456 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 V9GYS6 101 aa12.26□□□□□ -0.45
USP28-204ENST00000537642 TRAV40A0A0B4J280 105 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 OR5B21A6NL26 309 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 TRIM77I1YAP6 450 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 RHBDL1O75783 438 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 SULT1C4O75897 302 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 PLATP00750 562 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 NRASP01111 189 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 CCL1P22362 96 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 MTNR1AP48039 350 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 OCLNQ16625 522 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 ATPAF1Q5TC12 328 aaPredicted RBP12.25□□□□□ -0.45
USP28-204ENST00000537642 TMEM42Q69YG0 159 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 BTN2A1Q7KYR7 527 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 DOK3Q7L591 496 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 FAM216BQ8N7L0 139 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 ST8SIA4Q92187 359 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 ZNF48Q96MX3 618 aaPredicted RBP12.25□□□□□ -0.45
USP28-204ENST00000537642 C9orf16Q9BUW7 83 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 MS4A7Q9GZW8 240 aaPredicted RBP12.25□□□□□ -0.45
USP28-204ENST00000537642 SNTG1Q9NSN8 517 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 DNAJB11Q9UBS4 358 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 AASSQ9UDR5 926 aa12.25□□□□□ -0.45
USP28-204ENST00000537642 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.25□□□□□ -0.45
USP28-204ENST00000537642 SOX21Q9Y651 276 aaPredicted RBP12.25□□□□□ -0.45
USP28-204ENST00000537642 A6NIN4 97 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 ZNF879B4DU55 563 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 J3QRE1 110 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 TFF1P04155 84 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 LIPFP07098 398 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 SFTPBP07988 381 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 SELLP14151 372 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 MMP9P14780 707 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 TGM4P49221 684 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 ISL1P61371 349 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 ODF4Q2M2E3 257 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 C11orf91Q3C1V1 193 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 CLVS2Q5SYC1 327 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 MEDAGQ5VYS4 303 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 C9orf139Q6ZV77 190 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 SLC36A1Q7Z2H8 476 aa12.24□□□□□ -0.45
USP28-204ENST00000537642 PNLDC1Q8NA58 520 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms