RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 COL5A3P25940 1745 aaPredicted RBP1.91□□□□□ -2.1
CD44-233ENST00000531141 MYO18BQ8IUG5 2567 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 PTPN13Q12923 2485 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 FRYQ5TBA9 3013 aa1.91□□□□□ -2.1
CD44-233ENST00000531141 ARFGEF2Q9Y6D5 1785 aa1.9□□□□□ -2.1
CD44-233ENST00000531141 EP300Q09472 2414 aaPredicted RBP1.9□□□□□ -2.1
CD44-233ENST00000531141 GVINP1Q7Z2Y8 2422 aa1.9□□□□□ -2.1
CD44-233ENST00000531141 IGKV1-8A0A0C4DH67 115 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 A0A0J9YXV3 536 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 OR2AG2A6NM03 316 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 CCDC169A6NNP5 214 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 GABRR3A8MPY1 467 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 EIF1BO60739 113 aaKnown RBP1.9□□□□□ -2.11
CD44-233ENST00000531141 HUS1O60921 280 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 GLSO94925 669 aaPredicted RBP1.9□□□□□ -2.11
CD44-233ENST00000531141 OR2F2O95006 317 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 FGFR1OPO95684 399 aaKnown RBP1.9□□□□□ -2.11
CD44-233ENST00000531141 AGTP01019 485 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 IGLV3-25P01717 112 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 MYL2P10916 166 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 IL32P24001 234 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 LOXP28300 417 aaPredicted RBP1.9□□□□□ -2.11
CD44-233ENST00000531141 TALDO1P37837 337 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 NBL1P41271 181 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 EIF1P41567 113 aaKnown RBP1.9□□□□□ -2.11
CD44-233ENST00000531141 LRRC74AQ0VAA2 488 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 ART3Q13508 389 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 HSDL1Q3SXM5 330 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 HSP90AB3PQ58FF7 597 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 TEX30Q5JUR7 227 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 SPINT4Q6UDR6 99 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 SPESP1Q6UW49 350 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 SCD5Q86SK9 330 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 CSGALNACT2Q8N6G5 542 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 TMEM105Q8N8V8 129 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 OR9G4Q8NGQ1 327 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 NRBF2Q96F24 287 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 CHCHD7Q9BUK0 85 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 ACTR3CQ9C0K3 210 aaPredicted RBP1.9□□□□□ -2.11
CD44-233ENST00000531141 TMEM38AQ9H6F2 299 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 MYOZ1Q9NP98 299 aaPredicted RBP1.9□□□□□ -2.11
CD44-233ENST00000531141 LYARQ9NX58 379 aaKnown RBP1.9□□□□□ -2.11
CD44-233ENST00000531141 TJP1Q07157 1748 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 CHD9Q3L8U1 2897 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 NBEAQ8NFP9 2946 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 EVC2Q86UK5 1308 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 SYNRGQ9UMZ2 1314 aa1.9□□□□□ -2.11
CD44-233ENST00000531141 SSC5DA1L4H1 1573 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 PIEZO2Q9H5I5 2752 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 ABCA12Q86UK0 2595 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 PRRC2BQ5JSZ5 2229 aaKnown RBP1.89□□□□□ -2.11
CD44-233ENST00000531141 DOPEY1Q5JWR5 2465 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 IGHV3OR16-8A0A075B7F1 116 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 IGHV3-49A0A0A0MS15 119 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 IGHV3OR16-9A0A0B4J2B5 98 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 A0A1B0GUH1 482 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 OR5H1A6NKK0 313 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 SYCE1LA8MT33 242 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 NDUFC2-KCTD14E9PQ53 114 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 K7EM74 188 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 PLPP1O14494 284 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 HPRT1P00492 218 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 IGKV4-1P06312 121 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 RAB4AP20338 218 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 PRLHRP49683 370 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 RGS8P57771 180 aaPredicted RBP1.89□□□□□ -2.11
CD44-233ENST00000531141 SEMG2Q02383 582 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 SLC39A6Q13433 755 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 RBMY1FQ15415 496 aaKnown RBP1.89□□□□□ -2.11
CD44-233ENST00000531141 SPANXN2Q5MJ10 180 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 TTC29Q8NA56 475 aaPredicted RBP1.89□□□□□ -2.11
CD44-233ENST00000531141 APCDD1LQ8NCL9 501 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 OR1J4Q8NGS1 313 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 C8orf44Q96CB5 159 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 OPTNQ96CV9 577 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 BTN2A3PQ96KV6 586 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 CHP1Q99653 195 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 TOLLIPQ9H0E2 274 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 DEFB129Q9H1M3 183 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 TMEM185BQ9H7F4 350 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 NEK6Q9HC98 313 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 RETNQ9HD89 108 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 CLN6Q9NWW5 311 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 RHBDL2Q9NX52 303 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 DCAF16Q9NXF7 216 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 SLC39A1Q9NY26 324 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 C21orf62Q9NYP8 219 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 PDP1Q9P0J1 537 aaPredicted RBP1.89□□□□□ -2.11
CD44-233ENST00000531141 MTCH2Q9Y6C9 303 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 FRYLO94915 3013 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 COL4A6Q14031 1691 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 ZZEF1O43149 2961 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 CHD7Q9P2D1 2997 aa1.89□□□□□ -2.11
CD44-233ENST00000531141 SPEGQ15772 3267 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 IGHV1-3A0A0C4DH29 117 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 TMEM120BA0PK00 339 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 BTNL10A8MVZ5 291 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 H7C1H1 209 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 TAAR5O14804 337 aa1.88□□□□□ -2.11
CD44-233ENST00000531141 CYB5R3P00387 301 aaPredicted RBP1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms