RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZNF629Q9UEG4 869 aaPredicted RBP16.91■□□□□ 0.3
VPS28-213ENST00000530983 SPP1P10451 314 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 SLC6A9P48067 706 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 KCNJ3P48549 501 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 RAB32Q13637 225 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 C10orf91Q5T1B1 145 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 PRAMEF20Q5VT98 475 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 OR4A4PQ8NGN8 299 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 RHBDD1Q8TEB9 315 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 ARL11Q969Q4 196 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 TLNRD1Q9H1K6 362 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 EHFQ9NZC4 300 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 STMND1H3BQB6 276 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 BLVRBP30043 206 aaPredicted RBP16.9■□□□□ 0.3
VPS28-213ENST00000530983 TAS2R46P59540 309 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 BLOC1S1P78537 153 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 IL15RAQ13261 267 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 UBE2V2Q15819 145 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 ZNF585AQ6P3V2 769 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 DRAM2Q6UX65 266 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 POC1AQ8NBT0 407 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 C2CD4CQ8TF44 421 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 GLYATL2Q8WU03 294 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 PECRQ9BY49 303 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 METTL8Q9H825 291 aaKnown RBP16.9■□□□□ 0.3
VPS28-213ENST00000530983 RARRES3Q9UL19 164 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 CHCHD2Q9Y6H1 151 aaPredicted RBP16.9■□□□□ 0.3
VPS28-213ENST00000530983 A0A1W2PQM1 296 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 SERPINA2P20848 420 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 EIF1P41567 113 aaKnown RBP16.9■□□□□ 0.3
VPS28-213ENST00000530983 LSM6P62312 80 aaKnown RBP16.9■□□□□ 0.3
VPS28-213ENST00000530983 MST1LQ2TV78 715 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 PHYHD1Q5SRE7 291 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 GUSBP11Q6P575 273 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 SPAG16Q8N0X2 631 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 C2orf50Q96LR7 162 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 DEFB126Q9BYW3 111 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 GHRLQ9UBU3 117 aa16.9■□□□□ 0.3
VPS28-213ENST00000530983 CARHSP1Q9Y2V2 147 aaKnown RBP16.9■□□□□ 0.3
VPS28-213ENST00000530983 CACNA1EQ15878 2313 aa16.89■□□□□ 0.3
VPS28-213ENST00000530983 PMS2P1A4D2B8 440 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 CRYBA1P05813 215 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 FAHP16930 419 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 ADH6P28332 368 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 NPBWR1P48145 328 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 SLC35A1P78382 337 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 EIF3IQ13347 325 aaKnown RBP16.89■□□□□ 0.29
VPS28-213ENST00000530983 H3F3CQ6NXT2 135 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 TMEM200AQ86VY9 491 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 AKIRIN1Q9H9L7 192 aaPredicted RBP16.89■□□□□ 0.29
VPS28-213ENST00000530983 ZNF160Q9HCG1 818 aa16.89■□□□□ 0.29
VPS28-213ENST00000530983 F5H5K5 113 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 TLX3O43711 291 aaPredicted RBP16.88■□□□□ 0.29
VPS28-213ENST00000530983 DHRS3O75911 302 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 CSTBP04080 98 aaKnown RBP16.88■□□□□ 0.29
VPS28-213ENST00000530983 MSR1P21757 451 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 THBS4P35443 961 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 ENDOGQ14249 297 aaKnown RBP16.88■□□□□ 0.29
VPS28-213ENST00000530983 SLC16A14Q7RTX9 510 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 LURAP1LQ8IV03 231 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 SLC5A7Q9GZV3 580 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 MMP26Q9NRE1 261 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 V9GYS6 101 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 OR5H15A6NDH6 313 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 H3F3AP84243 136 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 RSPO1Q2MKA7 263 aaPredicted RBP16.88■□□□□ 0.29
VPS28-213ENST00000530983 ZFP82Q8N141 532 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 DMBX1Q8NFW5 382 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 SFT2D1Q8WV19 159 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 ZNF775Q96BV0 537 aaPredicted RBP16.88■□□□□ 0.29
VPS28-213ENST00000530983 TM2D1Q9BX74 207 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 NELFAQ9H3P2 528 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 OR2S2Q9NQN1 319 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 LPAR3Q9UBY5 353 aa16.88■□□□□ 0.29
VPS28-213ENST00000530983 IGKV1D-8A0A087WSZ0 117 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 IGHV5-10-1A0A0J9YXX1 117 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 A0A0U1RQV5 110 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 SERPINE3A8MV23 424 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 ZNF705EA8MWA4 302 aaPredicted RBP16.87■□□□□ 0.29
VPS28-213ENST00000530983 NUDT19A8MXV4 375 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 ONECUT2O95948 504 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 GLAP06280 429 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 HOXB5P09067 269 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 FCGR2AP12318 317 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 NSUN5P2Q63ZY6 315 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 GJC3Q8NFK1 279 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 RXFP4Q8TDU9 374 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 EMG1Q92979 244 aaKnown RBP16.87■□□□□ 0.29
VPS28-213ENST00000530983 NABP1Q96AH0 204 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 UBE2ZQ9H832 354 aaPredicted RBP16.87■□□□□ 0.29
VPS28-213ENST00000530983 MEX3AA1L020 520 aaKnown RBP16.87■□□□□ 0.29
VPS28-213ENST00000530983 FIGNL2A6NMB9 653 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 PTGER4P35408 488 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 CSNK1A1P48729 337 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 CCL7P80098 99 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 CHRFAM7AQ494W8 412 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 C10orf128Q5T292 105 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 ADAMTS17Q8TE56 1095 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 CHST5Q9GZS9 411 aa16.87■□□□□ 0.29
VPS28-213ENST00000530983 TMEM231Q9H6L2 316 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms