RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 UBA52P62987 128 aaKnown RBP8.8□□□□□ -1
CD44-227ENST00000528086 PRB3Q04118 309 aaPredicted RBP8.8□□□□□ -1
CD44-227ENST00000528086 EGR3Q06889 387 aa8.8□□□□□ -1
CD44-227ENST00000528086 DGUOKQ16854 277 aa8.8□□□□□ -1
CD44-227ENST00000528086 SLC25A30Q5SVS4 291 aa8.8□□□□□ -1
CD44-227ENST00000528086 ATPAF1Q5TC12 328 aaPredicted RBP8.8□□□□□ -1
CD44-227ENST00000528086 RUSC1-AS1Q66K80 236 aa8.8□□□□□ -1
CD44-227ENST00000528086 CCDC121Q6ZUS5 278 aa8.8□□□□□ -1
CD44-227ENST00000528086 C9orf139Q6ZV77 190 aa8.8□□□□□ -1
CD44-227ENST00000528086 BTN2A1Q7KYR7 527 aa8.8□□□□□ -1
CD44-227ENST00000528086 CATSPERDQ86XM0 798 aa8.8□□□□□ -1
CD44-227ENST00000528086 GID4Q8IVV7 300 aa8.8□□□□□ -1
CD44-227ENST00000528086 ZDHHC23Q8IYP9 409 aa8.8□□□□□ -1
CD44-227ENST00000528086 LY6G5BQ8NDX9 201 aa8.8□□□□□ -1
CD44-227ENST00000528086 OR10Z1Q8NGY1 313 aa8.8□□□□□ -1
CD44-227ENST00000528086 ANGPTL6Q8NI99 470 aa8.8□□□□□ -1
CD44-227ENST00000528086 RNF170Q96K19 258 aa8.8□□□□□ -1
CD44-227ENST00000528086 ZNF488Q96MN9 340 aa8.8□□□□□ -1
CD44-227ENST00000528086 GAFA1Q96PS6 74 aa8.8□□□□□ -1
CD44-227ENST00000528086 DUX5Q96PT3 197 aa8.8□□□□□ -1
CD44-227ENST00000528086 TEX12Q9BXU0 123 aa8.8□□□□□ -1
CD44-227ENST00000528086 PRDM13Q9H4Q3 707 aa8.8□□□□□ -1
CD44-227ENST00000528086 SNTG1Q9NSN8 517 aa8.8□□□□□ -1
CD44-227ENST00000528086 IKZF2Q9UKS7 526 aa8.8□□□□□ -1
CD44-227ENST00000528086 TMEM14AQ9Y6G1 99 aa8.8□□□□□ -1
CD44-227ENST00000528086 TRRAPQ9Y4A5 3859 aa8.8□□□□□ -1
CD44-227ENST00000528086 IGKV1D-17A0A075B6S4 117 aa8.79□□□□□ -1
CD44-227ENST00000528086 IGKV1-27A0A075B6S5 117 aa8.79□□□□□ -1
CD44-227ENST00000528086 TRAV40A0A0B4J280 105 aa8.79□□□□□ -1
CD44-227ENST00000528086 PQLC2LA1A4F0 135 aa8.79□□□□□ -1
CD44-227ENST00000528086 TMEM89A2RUT3 159 aa8.79□□□□□ -1
CD44-227ENST00000528086 TMEM210A6NLX4 147 aa8.79□□□□□ -1
CD44-227ENST00000528086 ZNF670-ZNF695F2Z2N8 137 aa8.79□□□□□ -1
CD44-227ENST00000528086 LOC110117498-PIK3R3F6TDL0 507 aa8.79□□□□□ -1
CD44-227ENST00000528086 H3BSH0 61 aa8.79□□□□□ -1
CD44-227ENST00000528086 DHRS3O75911 302 aa8.79□□□□□ -1
CD44-227ENST00000528086 RPP14O95059 124 aaKnown RBP8.79□□□□□ -1
CD44-227ENST00000528086 OR2T7P0C7T2 308 aa8.79□□□□□ -1
CD44-227ENST00000528086 MUC1P15941 1255 aaPredicted RBP8.79□□□□□ -1
CD44-227ENST00000528086 MAP2K3P46734 347 aa8.79□□□□□ -1
CD44-227ENST00000528086 ALDH3A2P51648 485 aa8.79□□□□□ -1
CD44-227ENST00000528086 NANOS3P60323 173 aaKnown RBP8.79□□□□□ -1
CD44-227ENST00000528086 SNRPGP62308 76 aaKnown RBP8.79□□□□□ -1
CD44-227ENST00000528086 IL5RAQ01344 420 aa8.79□□□□□ -1
CD44-227ENST00000528086 CEACAM21Q3KPI0 293 aa8.79□□□□□ -1
CD44-227ENST00000528086 ARMCX4Q5H9R4 360 aa8.79□□□□□ -1
CD44-227ENST00000528086 CRIP3Q6Q6R5 217 aa8.79□□□□□ -1
CD44-227ENST00000528086 BRD3OSQ6XYD6 125 aa8.79□□□□□ -1
CD44-227ENST00000528086 ZNF788Q6ZQV5 615 aa8.79□□□□□ -1
CD44-227ENST00000528086 NLRC3Q7RTR2 1065 aa8.79□□□□□ -1
CD44-227ENST00000528086 RNF144BQ7Z419 303 aa8.79□□□□□ -1
CD44-227ENST00000528086 RDH10Q8IZV5 341 aa8.79□□□□□ -1
CD44-227ENST00000528086 Q8N7P7 452 aa8.79□□□□□ -1
CD44-227ENST00000528086 OR2T27Q8NH04 317 aa8.79□□□□□ -1
CD44-227ENST00000528086 FAM81AQ8TBF8 368 aa8.79□□□□□ -1
CD44-227ENST00000528086 ZNF418Q8TF45 676 aaPredicted RBP8.79□□□□□ -1
CD44-227ENST00000528086 FAM216AQ8WUB2 273 aa8.79□□□□□ -1
CD44-227ENST00000528086 ZFAND2BQ8WV99 257 aa8.79□□□□□ -1
CD44-227ENST00000528086 APH1BQ8WW43 257 aa8.79□□□□□ -1
CD44-227ENST00000528086 AQP3Q92482 292 aa8.79□□□□□ -1
CD44-227ENST00000528086 TECTBQ96PL2 329 aa8.79□□□□□ -1
CD44-227ENST00000528086 MNTQ99583 582 aa8.79□□□□□ -1
CD44-227ENST00000528086 MICU1Q9BPX6 476 aa8.79□□□□□ -1
CD44-227ENST00000528086 RTL8AQ9BWD3 113 aa8.79□□□□□ -1
CD44-227ENST00000528086 GPR173Q9NS66 373 aa8.79□□□□□ -1
CD44-227ENST00000528086 ACOXLQ9NUZ1 547 aa8.79□□□□□ -1
CD44-227ENST00000528086 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.79□□□□□ -1
CD44-227ENST00000528086 RPUSD1Q9UJJ7 312 aaKnown RBP8.79□□□□□ -1
CD44-227ENST00000528086 ZNF391Q9UJN7 358 aa8.79□□□□□ -1
CD44-227ENST00000528086 PIGLQ9Y2B2 252 aa8.79□□□□□ -1
CD44-227ENST00000528086 MAB21L2Q9Y586 359 aa8.79□□□□□ -1
CD44-227ENST00000528086 CENPVL3A0A0U1RRI6 287 aa8.78□□□□□ -1
CD44-227ENST00000528086 DNAJC9-AS1A6NH13 148 aa8.78□□□□□ -1
CD44-227ENST00000528086 ANXA2P2A6NMY6 339 aa8.78□□□□□ -1
CD44-227ENST00000528086 ZNF879B4DU55 563 aa8.78□□□□□ -1
CD44-227ENST00000528086 F8VVB4 439 aa8.78□□□□□ -1
CD44-227ENST00000528086 F8VWA3 439 aa8.78□□□□□ -1
CD44-227ENST00000528086 TMPRSS2O15393 492 aa8.78□□□□□ -1
CD44-227ENST00000528086 NDUFA2O43678 99 aa8.78□□□□□ -1
CD44-227ENST00000528086 PSG2P11465 335 aa8.78□□□□□ -1
CD44-227ENST00000528086 ATP6V1B1P15313 513 aa8.78□□□□□ -1
CD44-227ENST00000528086 GNALP38405 381 aa8.78□□□□□ -1
CD44-227ENST00000528086 COMPP49747 757 aaPredicted RBP8.78□□□□□ -1
CD44-227ENST00000528086 NPY4RP50391 375 aa8.78□□□□□ -1
CD44-227ENST00000528086 GNG3P63215 75 aa8.78□□□□□ -1
CD44-227ENST00000528086 RIPPLY1Q0D2K3 151 aa8.78□□□□□ -1
CD44-227ENST00000528086 UBE2V2Q15819 145 aa8.78□□□□□ -1
CD44-227ENST00000528086 OCLNQ16625 522 aa8.78□□□□□ -1
CD44-227ENST00000528086 DEFB112Q30KQ8 113 aa8.78□□□□□ -1
CD44-227ENST00000528086 ZNF829Q3KNS6 432 aaPredicted RBP8.78□□□□□ -1
CD44-227ENST00000528086 TP53I3Q53FA7 332 aa8.78□□□□□ -1
CD44-227ENST00000528086 ZBTB37Q5TC79 503 aa8.78□□□□□ -1
CD44-227ENST00000528086 ZFP1Q6P2D0 407 aa8.78□□□□□ -1
CD44-227ENST00000528086 MOB3CQ70IA8 216 aa8.78□□□□□ -1
CD44-227ENST00000528086 CALHM1Q8IU99 346 aa8.78□□□□□ -1
CD44-227ENST00000528086 ENTHD1Q8IYW4 607 aa8.78□□□□□ -1
CD44-227ENST00000528086 PQLC1Q8N2U9 271 aa8.78□□□□□ -1
CD44-227ENST00000528086 CD177Q8N6Q3 437 aa8.78□□□□□ -1
CD44-227ENST00000528086 OR10H4Q8NGA5 316 aa8.78□□□□□ -1
CD44-227ENST00000528086 OR5A2Q8NGI9 324 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms