RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PRICKLE3O43900 615 aaPredicted RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 FGF17O60258 216 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 OR7C2O60412 319 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 YPEL1O60688 119 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ANXA4P09525 319 aaPredicted RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 OR10J4P0C629 311 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ZNF735P0CB33 412 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 SMIM10L2AP0DMW4 78 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 SMIM10L2BP0DMW5 78 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 CEACAM1P13688 526 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 AKR1C4P17516 323 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 FUT3P21217 361 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 EDNRAP25101 427 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 PYCR1P32322 319 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 TSFMP43897 325 aaKnown RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 GABRA2P47869 451 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ID4P47928 161 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 PNLIPRP1P54315 467 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 OR12D2P58182 307 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 TPPP2P59282 170 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 SUMO1P63165 101 aaKnown RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 CSNK1G2P78368 415 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 BTN3A2P78410 334 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ZNF85Q03923 595 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ZNF763Q0D2J5 394 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 LAMTOR4Q0VGL1 99 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 FOXF1Q12946 379 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 NR0B2Q15466 257 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 HNRNPA1L2Q32P51 320 aaKnown RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 EIPR1Q53HC9 387 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 TMEM41BQ5BJD5 291 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ZNF506Q5JVG8 444 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ACTL10Q5JWF8 245 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ATXN7L2Q5T6C5 722 aaPredicted RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 PHF19Q5T6S3 580 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 OR4A47Q6IF82 309 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ZNF66Q6ZN08 573 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 LHFPL2Q6ZUX7 228 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 TMEM144Q7Z5S9 345 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 TMEM150AQ86TG1 271 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 VASH2Q86V25 355 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 BATF2Q8N1L9 274 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 PNKDQ8N490 385 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 KLHDC1Q8N7A1 406 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 PNPLA1Q8N8W4 532 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 CYB561A3Q8NBI2 242 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 B3GALNT2Q8NCR0 500 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 OR51D1Q8NGF3 324 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 SLC25A43Q8WUT9 341 aaPredicted RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 FAM3CQ92520 227 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 APH1AQ96BI3 265 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 MOAP1Q96BY2 351 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 VWCEQ96DN2 955 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 TMEM169Q96HH4 297 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 LOXL4Q96JB6 756 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 C2orf50Q96LR7 162 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 YPEL2Q96QA6 119 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 GFI1Q99684 422 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 GABRG3Q99928 467 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 CCDC3Q9BQI4 270 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 CDT1Q9H211 546 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 SGK2Q9HBY8 427 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 HINT3Q9NQE9 182 aaKnown RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 TMEM106BQ9NUM4 274 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 CNIH4Q9P003 139 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ZNF319Q9P2F9 582 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ABT1Q9ULW3 272 aaKnown RBP5.15□□□□□ -1.59
CD44-225ENST00000527326 PPP1R3CQ9UQK1 317 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 ARL5AQ9Y689 179 aa5.15□□□□□ -1.59
CD44-225ENST00000527326 A0A1B0GU03 582 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 A0A1W2PNV4 684 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 A0A1W2PRS3 328 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 A0A1W2PS29 197 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 TSPAN11A1L157 253 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 MAP1LC3B2A6NCE7 125 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 G3V4G9 280 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 H0YL77 283 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 J3QR06 171 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 RBFOX2O43251 390 aaKnown RBP eCLIP5.14□□□□□ -1.59
CD44-225ENST00000527326 TBX19O60806 448 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 EFEMP2O95967 443 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 CD160O95971 181 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 CYB5AP00167 134 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 HBE1P02100 147 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 PRH1P02810 166 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 TYMSP04818 313 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 LIPFP07098 398 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 PTHLHP12272 177 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 CSNK2A2P19784 350 aaPredicted RBP5.14□□□□□ -1.59
CD44-225ENST00000527326 RPL12P30050 165 aaKnown RBP5.14□□□□□ -1.59
CD44-225ENST00000527326 MPLP40238 635 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 P2RY1P47900 373 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 SLC6A8P48029 635 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 CNN1P51911 297 aaKnown RBP5.14□□□□□ -1.59
CD44-225ENST00000527326 OAZ1P54368 228 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 BIDP55957 195 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 RIPPLY3P57055 190 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 S100A10P60903 97 aa5.14□□□□□ -1.59
CD44-225ENST00000527326 RPS11P62280 158 aaKnown RBP eCLIP5.14□□□□□ -1.59
CD44-225ENST00000527326 SIRPAP78324 504 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms