RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ZNF69Q9UC07 566 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 OR52A1Q9UKL2 312 aa17.13■□□□□ 0.33
VPS28-206ENST00000526734 SNTNA6NMZ2 147 aa17.12■□□□□ 0.33
VPS28-206ENST00000526734 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.12■□□□□ 0.33
VPS28-206ENST00000526734 PLATP00750 562 aa17.12■□□□□ 0.33
VPS28-206ENST00000526734 HOXA4Q00056 320 aaPredicted RBP17.12■□□□□ 0.33
VPS28-206ENST00000526734 PLEKHG7Q6ZR37 379 aa17.12■□□□□ 0.33
VPS28-206ENST00000526734 Q6ZSR3 168 aa17.12■□□□□ 0.33
VPS28-206ENST00000526734 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP17.12■□□□□ 0.33
VPS28-206ENST00000526734 YIPF7Q8N8F6 280 aa17.12■□□□□ 0.33
VPS28-206ENST00000526734 SCCPDHQ8NBX0 429 aa17.12■□□□□ 0.33
VPS28-206ENST00000526734 C9orf16Q9BUW7 83 aa17.12■□□□□ 0.33
VPS28-206ENST00000526734 PIGLQ9Y2B2 252 aa17.12■□□□□ 0.33
VPS28-206ENST00000526734 IGHV3OR15-7A0A075B7D8 119 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 A0A1W2PQL4 384 aaPredicted RBP17.11■□□□□ 0.33
VPS28-206ENST00000526734 NKX6-3A6NJ46 265 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 METTL15A6NJ78 407 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 ZNF879B4DU55 563 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 P2RY10O00398 339 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 DVL1O14640 695 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 GPM6AP51674 278 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 FGF12P61328 243 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 SNRPGP62308 76 aaKnown RBP17.11■□□□□ 0.33
VPS28-206ENST00000526734 ACTC1P68032 377 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 ACTA1P68133 377 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 WDR38Q5JTN6 314 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 CLVS2Q5SYC1 327 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 ZNF684Q5T5D7 378 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 PLCXD3Q63HM9 321 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 STUMQ69YW2 141 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 FAM220AQ7Z4H9 259 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 OR10H4Q8NGA5 316 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 ZNF671Q8TAW3 534 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 RPL3LQ92901 407 aaKnown RBP17.11■□□□□ 0.33
VPS28-206ENST00000526734 OR51I2Q9H344 312 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 SMURF1Q9HCE7 757 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 V9GYS6 101 aa17.11■□□□□ 0.33
VPS28-206ENST00000526734 TRAV40A0A0B4J280 105 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 ZNF732B4DXR9 585 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 DLGAP1O14490 977 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 RGS9O75916 674 aaPredicted RBP17.1■□□□□ 0.33
VPS28-206ENST00000526734 NRASP01111 189 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 FAHP16930 419 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 CCL1P22362 96 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 ACTG1P63261 375 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 OCLNQ16625 522 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 GPR157Q5UAW9 335 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 TMEM42Q69YG0 159 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 MOB3CQ70IA8 216 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 CBR4Q8N4T8 237 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 C22orf15Q8WYQ4 148 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 MED30Q96HR3 178 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 MYCBPQ99417 103 aaPredicted RBP17.1■□□□□ 0.33
VPS28-206ENST00000526734 TBX5Q99593 518 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 FGF23Q9GZV9 251 aaPredicted RBP17.1■□□□□ 0.33
VPS28-206ENST00000526734 S100A14Q9HCY8 104 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 PCDHGB1Q9Y5G3 927 aa17.1■□□□□ 0.33
VPS28-206ENST00000526734 E9PQ18 207 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 NDUFB3O43676 98 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 UBA52P62987 128 aaKnown RBP17.09■□□□□ 0.33
VPS28-206ENST00000526734 LRRC10Q5BKY1 277 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 CEP78Q5JTW2 689 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 METTL11BQ5VVY1 283 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 BTN2A1Q7KYR7 527 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 SSX6Q7RTT6 188 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 KCTD20Q7Z5Y7 419 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 ZNF573Q86YE8 665 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 SIGLECL1Q8N7X8 197 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 ZDHHC22Q8N966 263 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 ST8SIA4Q92187 359 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 CCL13Q99616 98 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 RASL12Q9NYN1 266 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 SLC22A13Q9Y226 551 aa17.09■□□□□ 0.33
VPS28-206ENST00000526734 A0A1B0GTI1 187 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 A0A1B0GVI7 797 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 MAGEB4O15481 346 aaPredicted RBP17.08■□□□□ 0.32
VPS28-206ENST00000526734 MPZL2O60487 215 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 IGHV4-38-2P0DP08 117 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 GLRA1P23415 457 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 TGM4P49221 684 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 PDCD1Q15116 288 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 CATSPERDQ86XM0 798 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 PQLC1Q8N2U9 271 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 OR14K1Q8NGZ2 314 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 AQP3Q92482 292 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 PPP1R14AQ96A00 147 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 MRPL48Q96GC5 212 aaKnown RBP17.08■□□□□ 0.32
VPS28-206ENST00000526734 WDFY2Q96P53 400 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 PLEKHA1Q9HB21 404 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 NLKQ9UBE8 527 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 RPUSD1Q9UJJ7 312 aaKnown RBP17.08■□□□□ 0.32
VPS28-206ENST00000526734 POLDIP2Q9Y2S7 368 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 KPTNQ9Y664 436 aa17.08■□□□□ 0.32
VPS28-206ENST00000526734 CLDN34H7C241 214 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 J3QT63 122 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 AKR7A2O43488 359 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 ENTPD6O75354 484 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 TOX4O94842 621 aa17.07■□□□□ 0.32
VPS28-206ENST00000526734 RPP14O95059 124 aaKnown RBP17.07■□□□□ 0.32
VPS28-206ENST00000526734 COMPP49747 757 aaPredicted RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms