RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ZSWIM8A7E2V4 1837 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 IGHV6-1A0A0B4J1U7 121 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 GOLGA6L4A6NEF3 574 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 CASQ2O14958 399 aaPredicted RBP1.85□□□□□ -2.11
CD44-215ENST00000525241 PRSS3P35030 304 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 DNAJC3Q13217 504 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 HHATQ5VTY9 493 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 APOBEC3HQ6NTF7 200 aaKnown RBP1.85□□□□□ -2.11
CD44-215ENST00000525241 WDR59Q6PJI9 974 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 CLEC2AQ6UVW9 174 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 DAW1Q8N136 415 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 COMMD1Q8N668 190 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 WDR31Q8NA23 367 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 INO80EQ8NBZ0 244 aaPredicted RBP1.85□□□□□ -2.11
CD44-215ENST00000525241 NAPGQ99747 312 aaPredicted RBP1.85□□□□□ -2.11
CD44-215ENST00000525241 ZC4H2Q9NQZ6 224 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 ZNF302Q9NR11 478 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 PXMP2Q9NR77 195 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 RAB22AQ9UL26 194 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 NDRG2Q9UN36 371 aaKnown RBP1.85□□□□□ -2.11
CD44-215ENST00000525241 OR51B2Q9Y5P1 312 aa1.85□□□□□ -2.11
CD44-215ENST00000525241 TMEM72A0PK05 275 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 GOLGA8TH3BQL2 631 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 MYL12BO14950 172 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 FGF4P08620 206 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 CD82P27701 267 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 ERFP50548 548 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 TAS2R39P59534 338 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 ATP6V0D1P61421 351 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 RPL18AQ02543 176 aaKnown RBP1.84□□□□□ -2.11
CD44-215ENST00000525241 BIKQ13323 160 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 LINC00336Q6ZUF6 198 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 NDUFAF7Q7L592 441 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 RNF10Q8N5U6 811 aaKnown RBP1.84□□□□□ -2.11
CD44-215ENST00000525241 OR2M7Q8NG81 312 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 OR1S1Q8NH92 325 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 TMEM175Q9BSA9 504 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 VPS37BQ9H9H4 285 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 SND1-IT1Q9HBX3 110 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 PRSS16Q9NQE7 514 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 TMEM100Q9NV29 134 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 MRPL22Q9NWU5 206 aaKnown RBP1.84□□□□□ -2.11
CD44-215ENST00000525241 VAX2Q9UIW0 290 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 CES1P1Q9UKY3 287 aa1.84□□□□□ -2.11
CD44-215ENST00000525241 KIAA1671Q9BY89 1806 aa1.84□□□□□ -2.12
CD44-215ENST00000525241 JCADQ9P266 1359 aa1.84□□□□□ -2.12
CD44-215ENST00000525241 IZUMO1RA6ND01 250 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 SLC22A20A6NK97 555 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 GOLGA8JA6NMD2 632 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 ZNF99A8MXY4 864 aaPredicted RBP1.83□□□□□ -2.12
CD44-215ENST00000525241 UPK1BO75841 260 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 GOLGA8HP0CJ92 632 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 ANXA8P13928 327 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 OR12D2P58182 307 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 MEF2CQ06413 473 aaPredicted RBP1.83□□□□□ -2.12
CD44-215ENST00000525241 KLHL40Q2TBA0 621 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 ANXA8L1Q5VT79 327 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 SMARCD3Q6STE5 483 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 USP50Q70EL3 339 aaPredicted RBP1.83□□□□□ -2.12
CD44-215ENST00000525241 PDPNQ86YL7 162 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 CMTM8Q8IZV2 173 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 ZNF420Q8TAQ5 688 aaPredicted RBP1.83□□□□□ -2.12
CD44-215ENST00000525241 MRPL48Q96GC5 212 aaKnown RBP1.83□□□□□ -2.12
CD44-215ENST00000525241 CSPG4P5Q96PW8 444 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 PKMYT1Q99640 499 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 TBL1XR1Q9BZK7 514 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 ARV1Q9H2C2 271 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 STX18Q9P2W9 335 aaKnown RBP1.83□□□□□ -2.12
CD44-215ENST00000525241 DDX19BQ9UMR2 479 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 PPIL1Q9Y3C6 166 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 PHLPP2Q6ZVD8 1323 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 ZNF407Q9C0G0 2248 aa1.83□□□□□ -2.12
CD44-215ENST00000525241 H3BN98 237 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 FARS2O95363 451 aaKnown RBP1.82□□□□□ -2.12
CD44-215ENST00000525241 TTC4O95801 387 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 NRASP01111 189 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 HRASP01112 189 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 KRASP01116 189 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 IGHG2P01859 326 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 OR5AC1P0C628 307 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 GRB2P62993 217 aaKnown RBP1.82□□□□□ -2.12
CD44-215ENST00000525241 GBE1Q04446 702 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 TNFRSF9Q07011 255 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 FA2HQ7L5A8 372 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 ZCCHC24Q8N2G6 241 aaKnown RBP1.82□□□□□ -2.12
CD44-215ENST00000525241 TRAM1L1Q8N609 369 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 OR4C13Q8NGP0 309 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 GLYATL2Q8WU03 294 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 ISOC2Q96AB3 205 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 OR51B5Q9H339 312 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 SLC22A7Q9Y694 548 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 ZBED9Q6R2W3 1325 aa1.82□□□□□ -2.12
CD44-215ENST00000525241 SIGLEC1Q9BZZ2 1709 aa1.81□□□□□ -2.12
CD44-215ENST00000525241 ARPC4-TTLL3A0A0A6YYG9 625 aa1.81□□□□□ -2.12
CD44-215ENST00000525241 A0A0G2JMP0 313 aa1.81□□□□□ -2.12
CD44-215ENST00000525241 A0A0X1KG70 313 aa1.81□□□□□ -2.12
CD44-215ENST00000525241 HACD1B0YJ81 288 aa1.81□□□□□ -2.12
CD44-215ENST00000525241 SUPT3HB4E1H0 165 aa1.81□□□□□ -2.12
CD44-215ENST00000525241 MAGEA1P43355 309 aa1.81□□□□□ -2.12
CD44-215ENST00000525241 ACOT2P49753 483 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms