RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 OR2V1Q8NHB1 315 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 PLPPR2Q96GM1 343 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 RHOFQ9HBH0 211 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 SLC17A5Q9NRA2 495 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 NTMQ9P121 344 aa11.31□□□□□ -0.6
USP53-209ENST00000514665 ZNF816-ZNF321PA0A0X1KG74 233 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 SPINK2P20155 84 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 THBS4P35443 961 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 RAB32Q13637 225 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ZNF774Q6NX45 483 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ZC3HAV1LQ96H79 300 aaKnown RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 ZNF75AQ96N20 296 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 CRISPLD2Q9H0B8 497 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 HIPK2Q9H2X6 1198 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 PRR13Q9NZ81 148 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 GPR160Q9UJ42 338 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 TDRD15B5MCY1 1934 aaKnown RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 TAF1LQ8IZX4 1826 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ATAD5Q96QE3 1844 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 A0A1W2PQF6 199 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ACKR3P25106 362 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ZNF239Q16600 458 aaKnown RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 DGAT2L6Q6ZPD8 337 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ZDHHC23Q8IYP9 409 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 H1FXQ92522 213 aaKnown RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 POLDIP2Q9Y2S7 368 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 LSM2Q9Y333 95 aaKnown RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 SBF2Q86WG5 1849 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 MPC2O95563 127 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 SCGB1D1O95968 90 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 GLAP06280 429 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 RRASP10301 218 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ACAA2P42765 397 aaKnown RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 PPIAP62937 165 aaKnown RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 FUT5Q11128 374 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 PNLIPRP3Q17RR3 467 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 TMEM41BQ5BJD5 291 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 HIST2H3AQ71DI3 136 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 ZNF573Q86YE8 665 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 C9orf62Q8N4C0 152 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 EXTL1Q92935 676 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 RPUSD4Q96CM3 377 aaKnown RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 GNPNAT1Q96EK6 184 aaPredicted RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 AKR1E2Q96JD6 320 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 PRSS27Q9BQR3 290 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 PLA2G3Q9NZ20 509 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ABCA7Q8IZY2 2146 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 TCRBV16S1A1N1A0A5B0 115 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ZNF32P17041 273 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 FUT3P21217 361 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 HOXD11P31277 338 aaPredicted RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 DSCR4P56555 118 aaPredicted RBP11.3□□□□□ -0.6
USP53-209ENST00000514665 ANKRD37Q7Z713 158 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 SPICQ8N5J4 248 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 ZDHHC22Q8N966 263 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 OR11L1Q8NGX0 322 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 PRRX2Q99811 253 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 UQCC2Q9BRT2 126 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 MED9Q9NWA0 146 aa11.3□□□□□ -0.6
USP53-209ENST00000514665 C9orf170A2RU37 121 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 TUBAL3A6NHL2 446 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 ZNF727A8MUV8 499 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 H7BYZ3 331 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 TNFSF14O43557 240 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 GPM6AP51674 278 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 NANOS3P60323 173 aaKnown RBP11.29□□□□□ -0.6
USP53-209ENST00000514665 FLI1Q01543 452 aaPredicted RBP11.29□□□□□ -0.6
USP53-209ENST00000514665 LSRQ86X29 649 aaPredicted RBP11.29□□□□□ -0.6
USP53-209ENST00000514665 OR8U1Q8NH10 309 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 FSCN3Q9NQT6 498 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 ICAM5Q9UMF0 924 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 FAM96BQ9Y3D0 163 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 NRXN2Q9P2S2 1712 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 MDFIC2A0A1B0GVS7 189 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 NAT1P18440 290 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 NXPH1P58417 271 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 FUT7Q11130 342 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 C4orf17Q53FE4 359 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 LYPD8Q6UX82 237 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 UHRF2Q96PU4 802 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 MRPS18AQ9NVS2 196 aaKnown RBP11.29□□□□□ -0.6
USP53-209ENST00000514665 ACACAQ13085 2346 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 RAB19A4D1S5 217 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 FOXS1O43638 330 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 AQP8O94778 261 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 RD3LP0DJH9 198 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 SULT1A3P0DMM9 295 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 SULT1A4P0DMN0 295 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 NDUFB7P17568 137 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 EFNB2P52799 333 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 RAB1AP62820 205 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 C10orf90Q96M02 699 aa11.29□□□□□ -0.6
USP53-209ENST00000514665 KLF13Q9Y2Y9 288 aaPredicted RBP11.29□□□□□ -0.6
USP53-209ENST00000514665 ZNF205O95201 554 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 CSF2RBP32927 897 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 PMP22Q01453 160 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 LGALSLQ3ZCW2 172 aaPredicted RBP11.28□□□□□ -0.6
USP53-209ENST00000514665 ADGRG3Q86Y34 549 aa11.28□□□□□ -0.6
USP53-209ENST00000514665 FAM219AQ8IW50 185 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms