RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 OR14K1Q8NGZ2 314 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 OR6S1Q8NH40 331 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 RAB33BQ9H082 229 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 IGHV3-15A0A0B4J1V0 119 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 MED19A0JLT2 244 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 ANGPTL7O43827 346 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 CBR1P16152 277 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF708P17019 499 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 PPT1P50897 306 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 CAV2P51636 162 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 RRADP55042 308 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 DCDP81605 110 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 CDCP2Q5VXM1 449 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 BRICD5Q6PL45 260 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 SLC25A47Q6Q0C1 308 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 DOK3Q7L591 496 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 GLYATL2Q8WU03 294 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 TOMM40LQ969M1 308 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 AKR1E2Q96JD6 320 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 SULT4A1Q9BR01 284 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF2Q9BSG1 426 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 BIN3Q9NQY0 253 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 C14orf166Q9Y224 244 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 URB1O60287 2271 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 A0A1B0GV50 99 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 NPIPB13A6NJU9 1138 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 NPIPB4C9JG80 1138 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 K7EPK0 472 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 RPL12P30050 165 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 FCGR2CP31995 323 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 GUCA1AP43080 201 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 Q6ZRG5 221 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 PEG10Q86TG7 708 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 SLC25A45Q8N413 288 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 FAM71E2Q8N5Q1 922 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 SMRP1Q8NCR6 262 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 PECRQ9BY49 303 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 AKIRIN1Q9H9L7 192 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 PNRC2Q9NPJ4 139 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 MCTS1Q9ULC4 181 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 CPAMD8Q8IZJ3 1885 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 OR8U9P0C7N5 309 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 HKR1P10072 659 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 AVPI1Q5T686 147 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 IL34Q6ZMJ4 242 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 C20orf196Q8IYI0 205 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 SEMA6DQ8NFY4 1073 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 OR8U1Q8NH10 309 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 LYZL4Q96KX0 146 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 MRGPRX4Q96LA9 322 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 PLEKHJ1Q9NW61 149 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF581Q9P0T4 197 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 FBXL17Q9UF56 701 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 WIF1Q9Y5W5 379 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 FAM221AA4D161 298 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 TMEM225BP0DP42 221 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 NXPH1P58417 271 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 TAF9Q16594 264 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 C10orf91Q5T1B1 145 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 EIF5AL1Q6IS14 154 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 SECTM1Q8WVN6 248 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 EMG1Q92979 244 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 MRPL24Q96A35 216 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 RBM24Q9BX46 236 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 CNTNAP3Q9BZ76 1288 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 MOB1AQ9H8S9 216 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 SHANK1Q9Y566 2161 aa8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 KLF2Q9Y5W3 355 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-215ENST00000512632 CEACAM18A8MTB9 384 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 G3V3Y1 287 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 TMEM33P57088 247 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 TGIF1Q15583 401 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 DHRS11Q6UWP2 260 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 C14orf79Q96F83 325 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 BSCL2Q96G97 398 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 OR6C1Q96RD1 312 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 NUDT16L1Q9BRJ7 211 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 CRB3Q9BUF7 120 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 DAOP14920 347 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 SUMO3P55854 103 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 TAS2R46P59540 309 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 IL15RAQ13261 267 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 SWI5Q1ZZU3 235 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 TSPO2Q5TGU0 170 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 SULF2Q8IWU5 870 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 FNDC9Q8TBE3 224 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 SMIM8Q96KF7 97 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 USB1Q9BQ65 265 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 C20orf24Q9BUV8 137 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 A0A1W2PNV4 684 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 IFNA2P01563 188 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 PET100P0DJ07 73 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 ADH6P28332 368 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 FXYD4P59646 89 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 SNRPEP62304 92 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 SAT2Q96F10 170 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 CLCC1Q96S66 551 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 FAAP24Q9BTP7 215 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 MYOTQ9UBF9 498 aa8.12□□□□□ -1.11
LIMCH1-215ENST00000512632 ANAPC10Q9UM13 185 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms