RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 RBM7Q9Y580 266 aaKnown RBP7.29□□□□□ -1.24
USP54-215ENST00000497106 PIN1P1O15428 100 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 CTAG2O75638 210 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 AMY2AP04746 511 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM157BP0CG42 384 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 MGMTP16455 207 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 OXA1LQ15070 435 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 RBMS2Q15434 407 aaKnown RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 KCNJ8Q15842 424 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 RNFT1Q5M7Z0 435 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 METTL11BQ5VVY1 283 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM122CQ6P4D5 195 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 WFDC8Q8IUA0 241 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 OR5H6Q8NGV6 325 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 OR2AE1Q8NHA4 323 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 ADAT3Q96EY9 351 aaPredicted RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 MIXL1Q9H2W2 232 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 CLEC4MQ9H2X3 399 aaPredicted RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 CNTD2Q9H8S5 307 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 V9GYH0 126 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 CHD7Q9P2D1 2997 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 OTOGLQ3ZCN5 2332 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 ZNF732B4DXR9 585 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 CST4P01036 141 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 DBHP09172 617 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 INHBBP09529 407 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 CSF3P09919 207 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 PTAFRP25105 342 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 GMFBP60983 142 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 SCGB2B2Q4G0G5 96 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 BTLAQ7Z6A9 289 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 ZNF565Q8N9K5 539 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 ZNF610Q8N9Z0 462 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 PXT1Q8NFP0 134 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 OR56B4Q8NH76 319 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 RGP1Q92546 391 aaPredicted RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 DIRC2Q96SL1 478 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 SLC25A21Q9BQT8 299 aaPredicted RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 KCNJ16Q9NPI9 418 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 MEMO1Q9Y316 297 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 ATP23Q9Y6H3 246 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 PMF1-BGLAPU3KQ54 211 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 GMDSO60547 372 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 CTXN2P0C2S0 81 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM87AP0C7U9 286 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 IGFBP3P17936 291 aaPredicted RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 ASCL1P50553 236 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 ARL6IP6Q8N6S5 226 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 TMEM229BQ8NBD8 167 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 OR51A4Q8NGJ6 313 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 SLC7A6Q92536 515 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 EMG1Q92979 244 aaKnown RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 NINJ1Q92982 152 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 CMBLQ96DG6 245 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 AUNIPQ9H7T9 357 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 WASF3Q9UPY6 502 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 ZNF318Q5VUA4 2279 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 KIF26BQ2KJY2 2108 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 EP300Q09472 2414 aaPredicted RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A10PA6NDY2 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A18PA6NE21 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A16PA6NEW6 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A20PA6NIJ5 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A8PA6NJQ4 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A7PA6NKC0 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A22PA8MWA6 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A12PA8MX19 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A5PA8MXJ8 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A23PA8MXZ1 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 CDC14BO60729 498 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 NXPH2O95156 264 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 SLC34A2O95436 690 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A15PP0C7V4 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A13PP0C7W8 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A14PP0C7W9 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 FAM90A24PP0C7X0 464 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 IGHV1-2P23083 117 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 OTX1P32242 354 aaPredicted RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 ZNF83P51522 516 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 KLF3P57682 345 aaPredicted RBP7.28□□□□□ -1.24
USP54-215ENST00000497106 C3orf36Q3SXR2 165 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 ORAI1Q96D31 301 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 GINS4Q9BRT9 223 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 DNAJB11Q9UBS4 358 aa7.28□□□□□ -1.24
USP54-215ENST00000497106 KIR2DS1A0A191URI9 304 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 KIR2DS4P43632 304 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 KIR2DS1Q14954 304 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 NHLRC1Q6VVB1 395 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 CCDC71LQ8N9Z2 235 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 NAXEQ8NCW5 288 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 ST6GALNAC3Q8NDV1 305 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 OR5D18Q8NGL1 313 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 OR10S1Q8NGN2 331 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 TRIM63Q969Q1 353 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 FN3KRPQ9HA64 309 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 PNRC2Q9NPJ4 139 aaKnown RBP7.27□□□□□ -1.25
USP54-215ENST00000497106 B8ZZF3 427 aa7.27□□□□□ -1.25
USP54-215ENST00000497106 SRSF10O75494 262 aaKnown RBP7.27□□□□□ -1.25
USP54-215ENST00000497106 OR7C1O76099 320 aaPredicted RBP7.27□□□□□ -1.25
USP54-215ENST00000497106 TRAPPC2P0DI81 140 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms