RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZNF724A8MTY0 619 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 MTCP1P56278 107 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 TMEM42Q69YG0 159 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 CPEB3Q8NE35 698 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 PRRG4Q9BZD6 226 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 hCG_38984A0A1B0GV85 526 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 SPAARA0A1B0GVQ0 90 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 OR2AT4A6NND4 320 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 CDRT15L2A8MXV6 281 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 ERVH48-1M5A8F1 160 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 FAM3AP98173 230 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF92Q03936 586 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 DHRS2Q13268 280 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 CNN3Q15417 329 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 MICBQ29980 383 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 SLC25A42Q86VD7 318 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 ELL3Q9HB65 397 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 ACKR4Q9NPB9 350 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 CACNA1HO95180 2353 aa18.35■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF587BE7ETH6 402 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 SLC22A5O76082 557 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 IFNA6P05013 189 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 BLVRBP30043 206 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 C9orf135Q5VTT2 229 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF100Q8IYN0 542 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 FBXW5Q969U6 566 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 PECRQ9BY49 303 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF407Q9C0G0 2248 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 IGKV1-27A0A075B6S5 117 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 OR6C65A6NJZ3 312 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 MPC2O95563 127 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 ACTL6AO96019 429 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 LIPCP11150 499 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 EDN3P14138 238 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF24P17028 368 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 PRKACBP22694 351 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 CPT2P23786 658 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 CBX5P45973 191 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 FOXG1P55316 489 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 ARFRP1Q13795 201 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 SLC10A1Q14973 349 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 CLVS2Q5SYC1 327 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 C11orf88Q6PI97 169 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 ZNF680Q8NEM1 530 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 ST8SIA4Q92187 359 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 ATPIF1Q9UII2 106 aa18.34■□□□□ 0.53
CCDC88B-208ENST00000492980 A0A096LPE4 126 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 FAM230AA0A1W2PPH8 454 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 A0A1W2PPZ6 126 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 TMEM225BP0DP42 221 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 CXCL2P19875 107 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 SOX8P57073 446 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 ACTBL2Q562R1 376 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 VAX1Q5SQQ9 334 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 DPCDQ9BVM2 203 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 C1QTNF5Q9BXJ0 243 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 PRDM14Q9GZV8 571 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 FN3KRPQ9HA64 309 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 FREM1Q5H8C1 2179 aa18.33■□□□□ 0.52
CCDC88B-208ENST00000492980 RGS11O94810 467 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 HLA-AP01891 365 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 ZBTB25P24278 435 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 ARG2P78540 354 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 GK2Q14410 553 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 RNPS1Q15287 305 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 OR8B8Q15620 311 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 GRK1Q15835 563 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 ZNF766Q5HY98 468 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 LY6G6FQ5SQ64 297 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 C6orf183Q5T699 404 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 ASB13Q8WXK3 278 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 APH1AQ96BI3 265 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 ELMOD3Q96FG2 381 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 CPNE2Q96FN4 548 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 XRCC2O43543 280 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 NRASP01111 189 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 RRADP55042 308 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 VASH2Q86V25 355 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 HOGA1Q86XE5 327 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 SPSB4Q96A44 273 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 Q96M66 194 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 DEFB127Q9H1M4 99 aa18.32■□□□□ 0.52
CCDC88B-208ENST00000492980 OTOGLQ3ZCN5 2332 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 ANKRD34BA5PLL1 514 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 IL2RAP01589 272 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 RNFT1Q5M7Z0 435 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 COLCA1Q6ZS62 124 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 LHFPL2Q6ZUX7 228 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 LYG2Q86SG7 212 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 METTL9Q9H1A3 318 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 ZNF552Q9H707 407 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 ZNF318Q5VUA4 2279 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 DNAJC13O75165 2243 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 SERPINE3A8MV23 424 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 SPRY1O43609 319 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 ANGPTL7O43827 346 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 NFYAP23511 347 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 CD34P28906 385 aa18.31■□□□□ 0.52
CCDC88B-208ENST00000492980 RBP2P50120 134 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms