RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 MRPL48Q96GC5 212 aaKnown RBP11.24□□□□□ -0.61
HDAC3-213ENST00000492506 TPD52L3Q96J77 140 aa11.24□□□□□ -0.61
HDAC3-213ENST00000492506 OR2A7Q96R45 310 aa11.24□□□□□ -0.61
HDAC3-213ENST00000492506 LINC00470Q9BZP3 86 aa11.24□□□□□ -0.61
HDAC3-213ENST00000492506 MS4A7Q9GZW8 240 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-213ENST00000492506 SLC38A1Q9H2H9 487 aa11.24□□□□□ -0.61
HDAC3-213ENST00000492506 ESM1Q9NQ30 184 aa11.24□□□□□ -0.61
HDAC3-213ENST00000492506 NANSQ9NR45 359 aa11.24□□□□□ -0.61
HDAC3-213ENST00000492506 FAM74A7A6NL05 159 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 VSTM5A8MXK1 200 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 DISC1C4P0D8 188 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 LRRN3E7EW58 273 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 RPL36A-HNRNPH2H7BZ11 118 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 ZNF593O00488 134 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 RNASET2O00584 256 aaKnown RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 NUPL2O15504 423 aaKnown RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 DIRAS1O95057 198 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 HIST1H2ABP04908 130 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 ACAA1P09110 424 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 CXCL3P19876 107 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 GPR6P46095 362 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 CDH12P55289 794 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 SNTB2Q13425 540 aaKnown RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 FAM74A3Q4VXF1 159 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 TMEM225Q6GV28 225 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 NIPAL3Q6P499 406 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 TMUB2Q71RG4 321 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 HIST3H2AQ7L7L0 130 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 OR8J2Q8NGG1 315 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 NANPQ8TBE9 248 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 HIST1H2ACQ93077 130 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 TSNAXQ99598 290 aaKnown RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 ZNF747Q9BV97 191 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 MRPL37Q9BZE1 423 aaKnown RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 ZCCHC4Q9H5U6 513 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 SEBOXQ9HB31 216 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 CACYBPQ9HB71 228 aaKnown RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 NOX3Q9HBY0 568 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 TMEM138Q9NPI0 162 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 G6PC2Q9NQR9 355 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 TREM2Q9NZC2 230 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 CARHSP1Q9Y2V2 147 aaKnown RBP11.23□□□□□ -0.61
HDAC3-213ENST00000492506 ENPP4Q9Y6X5 453 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 NOTCH1P46531 2555 aa11.23□□□□□ -0.61
HDAC3-213ENST00000492506 LOC105371242A0A075B767 164 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 SYNGR3O43761 229 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 ZNF432O94892 652 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 VAMP5O95183 116 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 GADD45GO95257 159 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 PNPP00491 289 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 IFNA10P01566 189 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 IGHV2-70P01814 119 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 RPA2P15927 270 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 RPS4Y1P22090 263 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 PAICSP22234 425 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 HTR2AP28223 471 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 ARR3P36575 388 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 MECP2P51608 486 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 MRPS10P82664 201 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 ARF1P84077 181 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 ECH1Q13011 328 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 PAN3Q58A45 887 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 FAHD2BQ6P2I3 314 aaPredicted RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 CD300LDQ6UXZ3 194 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 ZDHHC22Q8N966 263 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 AQP11Q8NBQ7 271 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 OR52I1Q8NGK6 324 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 OR51F2Q8NH61 342 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 TCTEX1D2Q8WW35 142 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 MRPL24Q96A35 216 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 ZNF837Q96EG3 531 aaPredicted RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 FAHD2AQ96GK7 314 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 PANX1Q96RD7 426 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 DDOQ99489 341 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 OCSTAMPQ9BR26 566 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 PAPOLGQ9BWT3 736 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 JAM3Q9BX67 310 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 BCL2L14Q9BZR8 327 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 PLEKHA1Q9HB21 404 aa11.22□□□□□ -0.61
HDAC3-213ENST00000492506 TESQ9UGI8 421 aaKnown RBP11.22□□□□□ -0.61
HDAC3-213ENST00000492506 A0A0D9SG52 128 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 UBE2QL1A1L167 161 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 ANXA2P2A6NMY6 339 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 C1orf196B1AJZ1 125 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 G3V3Q6 166 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 HMGN4O00479 90 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 FRS3O43559 492 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 CREBL2O60519 120 aaPredicted RBP11.21□□□□□ -0.61
HDAC3-213ENST00000492506 EIF3GO75821 320 aaKnown RBP eCLIP11.21□□□□□ -0.61
HDAC3-213ENST00000492506 KDM4BO94953 1096 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 ALDOBP05062 364 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 FCER2P06734 321 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 CHRM4P08173 479 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 MGMTP16455 207 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 ACHEP22303 614 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 UQCRC2P22695 453 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 TMEM33P57088 247 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 RPS25P62851 125 aaKnown RBP11.21□□□□□ -0.61
HDAC3-213ENST00000492506 ERVK-25P63136 954 aa11.21□□□□□ -0.61
HDAC3-213ENST00000492506 DEFA6Q01524 100 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms