RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-210	ENST00000485247	GP9	P14770	177 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	CTLA4	P16410	223 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	CD24	P25063	80 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	AZGP1	P25311	298 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	ALDH3A1	P30838	453 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	OR3A4P	P47883	348 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	DYNLT3	P51808	116 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	ZNF134	P52741	427 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	GNG11	P61952	73 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	LCN6	P62502	163 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	CSNK2B	P67870	215 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.16	□□□□□ -1.74	2e-8	■■■■■ 27
PTPN4-210	ENST00000485247	ENTPD8	Q5MY95	495 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	STUM	Q69YW2	141 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	ZNF613	Q6PF04	617 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	WDR82	Q6UXN9	313 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	MRPL21	Q7Z2W9	205 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	DHDDS	Q86SQ9	333 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	NAA40	Q86UY6	237 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	C11orf53	Q8IXP5	236 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	C11orf42	Q8N5U0	333 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	ZNRF1	Q8ND25	227 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	OR4Q3	Q8NH05	313 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	SVIP	Q8NHG7	77 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	NFKBID	Q8NI38	313 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	FNDC8	Q8TC99	324 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	LRRC8C	Q8TDW0	803 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	C12orf43	Q96C57	262 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	AKR1E2	Q96JD6	320 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	GAFA1	Q96PS6	74 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	ALG8	Q9BVK2	526 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	RNPEPL1	Q9HAU8	725 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	ZFP57	Q9NU63	452 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	HAO2	Q9NYQ3	351 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	SLC7A7	Q9UM01	511 aa		4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	TBL2	Q9Y4P3	447 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-210	ENST00000485247	PLEC	Q15149	4684 aa	Known RBP	4.15	□□□□□ -1.74
PTPN4-210	ENST00000485247	GGT3P	A6NGU5	568 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	FAM90A22P	A8MWA6	464 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247		F5H5K5	113 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	BHLHE40	O14503	412 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	COPE	O14579	308 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	SIGLEC5	O15389	551 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	ZSCAN12	O43309	604 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	LCAT	P04180	440 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	IGHV4-30-4	P0DP06	118 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	SPN	P16150	400 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	CCL3L1	P16619	93 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	AQP1	P29972	269 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	GRK5	P34947	590 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	GABRA2	P47869	451 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	ENTPD1	P49961	510 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	SLC25A1	P53007	311 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	CAV3	P56539	151 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	OR12D2	P58182	307 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	RPL27	P61353	136 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	DYNC1I2	Q13409	638 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	SEC23B	Q15437	767 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	RGN	Q15493	299 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	RSPO1	Q2MKA7	263 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	ALG10	Q5BKT4	473 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	ATPAF1	Q5TC12	328 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	PLBD1	Q6P4A8	553 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	DPY19L4	Q7Z388	723 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	WDR86	Q86TI4	376 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	KRT73	Q86Y46	540 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	EGFL6	Q8IUX8	553 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	SMYD1	Q8NB12	490 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	TMEM185A	Q8NFB2	350 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	OR6T1	Q8NGN1	323 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	OR8S1	Q8NH09	359 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	OR8U1	Q8NH10	309 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	OR5K1	Q8NHB7	308 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	PFN4	Q8NHR9	129 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	IFT81	Q8WYA0	676 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	SGTB	Q96EQ0	304 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	MED30	Q96HR3	178 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	NOL4L	Q96MY1	436 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	SLC25A33	Q9BSK2	321 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	ZNF426	Q9BUY5	554 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	WDR13	Q9H1Z4	485 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	RERGL	Q9H628	205 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	PPP1R3E	Q9H7J1	279 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	DCLRE1B	Q9H816	532 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	LINC00527	Q9UJ94	153 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	RPS6KA6	Q9UK32	745 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	POLR1D	Q9Y2S0	133 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	SORL1	Q92673	2214 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	ABCA13	Q86UQ4	5058 aa		4.15	□□□□□ -1.75
PTPN4-210	ENST00000485247	ALMS1	Q8TCU4	4167 aa		4.14	□□□□□ -1.75
PTPN4-210	ENST00000485247	hCG_1809904	A0A1W2PP81	198 aa		4.14	□□□□□ -1.75
PTPN4-210	ENST00000485247		A0A1W2PPE2	198 aa		4.14	□□□□□ -1.75
PTPN4-210	ENST00000485247		A0A1W2PR64	198 aa		4.14	□□□□□ -1.75
PTPN4-210	ENST00000485247		A0A1W2PRV1	198 aa		4.14	□□□□□ -1.75
PTPN4-210	ENST00000485247	TRAPPC13	A5PLN9	417 aa		4.14	□□□□□ -1.75
PTPN4-210	ENST00000485247	PRORSD1P	A6NEY8	169 aa		4.14	□□□□□ -1.75
PTPN4-210	ENST00000485247		A6NIZ1	184 aa		4.14	□□□□□ -1.75
PTPN4-210	ENST00000485247	NPIPB13	A6NJU9	1138 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms