RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 BRICD5Q6PL45 260 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 COMMD2Q86X83 199 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 LDLRAD3Q86YD5 345 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 CMTM4Q8IZR5 234 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 DYRK2Q92630 601 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 GAFA1Q96PS6 74 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 NIPAL2Q9H841 368 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 SLC25A19Q9HC21 320 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 ABCB9Q9NP78 766 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 TVP23BQ9NYZ1 205 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 FAM96BQ9Y3D0 163 aa17.72■□□□□ 0.43
USP40-215ENST00000484528 CLPSL1A2RUU4 121 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 PRR32B1ATL7 298 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 RNASEK-C17orf49H0YIS7 233 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 RHBDL1O75783 438 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 ANXA8P13928 327 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 DCTDP32321 178 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 IER3P46695 156 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 SNAPC1Q16533 368 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 DGUOKQ16854 277 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 ATPAF1Q5TC12 328 aaPredicted RBP17.71■□□□□ 0.43
USP40-215ENST00000484528 ZNF788Q6ZQV5 615 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 PNKDQ8N490 385 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 Q8N7P7 452 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 ANGPTL6Q8NI99 470 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 HIST1H2AAQ96QV6 131 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 ELL3Q9HB65 397 aaPredicted RBP17.71■□□□□ 0.43
USP40-215ENST00000484528 DNAJB9Q9UBS3 223 aa17.71■□□□□ 0.43
USP40-215ENST00000484528 SLC25A10Q9UBX3 287 aaPredicted RBP17.71■□□□□ 0.43
USP40-215ENST00000484528 ZNF816-ZNF321PA0A0X1KG74 233 aa17.7■□□□□ 0.42
USP40-215ENST00000484528 CCDC182A6NF36 153 aa17.7■□□□□ 0.42
USP40-215ENST00000484528 GYG2O15488 501 aa17.7■□□□□ 0.42
USP40-215ENST00000484528 NDUFB7P17568 137 aa17.7■□□□□ 0.42
USP40-215ENST00000484528 KRTAP10-3P60369 221 aa17.7■□□□□ 0.42
USP40-215ENST00000484528 FAM206AQ9NX38 181 aa17.7■□□□□ 0.42
USP40-215ENST00000484528 NLKQ9UBE8 527 aa17.7■□□□□ 0.42
USP40-215ENST00000484528 COPS3Q9UNS2 423 aa17.7■□□□□ 0.42
USP40-215ENST00000484528 TMEM269A0A1B0GVZ9 245 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 ZNF732B4DXR9 585 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 M0R129 80 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 GPR37O15354 613 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 GLRA1P23415 457 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 MAP2K3P46734 347 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 GABRA2P47869 451 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 TAF9Q16594 264 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 FAM76BQ5HYJ3 339 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 C8orf46Q8TAG6 207 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 PPP1R14AQ96A00 147 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 TEX12Q9BXU0 123 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 YIPF3Q9GZM5 350 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 DNTTIP1Q9H147 329 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 YY1AP1Q9H869 796 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 RNF114Q9Y508 228 aa17.69■□□□□ 0.42
USP40-215ENST00000484528 A0A1W2PQ09 198 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 TCRBV3S1A0A5B6 114 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 OR2AT4A6NND4 320 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 NPFFO15130 113 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 SIGLEC5O15389 551 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 FBP1P09467 338 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 CRISP1P54107 249 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 DNAL1Q4LDG9 190 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 KCTD18Q6PI47 426 aaPredicted RBP17.68■□□□□ 0.42
USP40-215ENST00000484528 METAP1DQ6UB28 335 aaPredicted RBP17.68■□□□□ 0.42
USP40-215ENST00000484528 TRPM8Q7Z2W7 1104 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 LINC01006Q8NI28 216 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 OR51E1Q8TCB6 317 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 MED30Q96HR3 178 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 TEAD3Q99594 435 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 PBOV1Q9GZY1 135 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 DPAGT1Q9H3H5 408 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 GPR84Q9NQS5 396 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 PAPOLBQ9NRJ5 636 aaKnown RBP17.68■□□□□ 0.42
USP40-215ENST00000484528 ZNRD1Q9P1U0 126 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 IKZF2Q9UKS7 526 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 POMPQ9Y244 141 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 TGP01266 2768 aa17.68■□□□□ 0.42
USP40-215ENST00000484528 IGKV1D-17A0A075B6S4 117 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 A0A0U1RQV5 110 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 FAHP16930 419 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 HOXB6P17509 224 aaKnown RBP17.67■□□□□ 0.42
USP40-215ENST00000484528 EEF1B2P24534 225 aaKnown RBP17.67■□□□□ 0.42
USP40-215ENST00000484528 RPL15P61313 204 aaKnown RBP17.67■□□□□ 0.42
USP40-215ENST00000484528 GNG3P63215 75 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 DEFA6Q01524 100 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 GUCA2AQ02747 115 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 MFGE8Q08431 387 aaPredicted RBP17.67■□□□□ 0.42
USP40-215ENST00000484528 LCN1P1Q5VSP4 162 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 PLCXD3Q63HM9 321 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 MOB3CQ70IA8 216 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 BCDIN3DQ7Z5W3 292 aaKnown RBP17.67■□□□□ 0.42
USP40-215ENST00000484528 THAP5Q7Z6K1 395 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 ZNRF1Q8ND25 227 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 TMEM185AQ8NFB2 350 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 TNFRSF14Q92956 283 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 CITED1Q99966 193 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 MROQ9BYG7 248 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 OR51I2Q9H344 312 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 GTF2A1LQ9UNN4 478 aa17.67■□□□□ 0.42
USP40-215ENST00000484528 CAB39Q9Y376 341 aaPredicted RBP17.67■□□□□ 0.42
USP40-215ENST00000484528 PRKYO43930 277 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms