RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 CD8AP01732 235 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 ZNF32P17041 273 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 MPZP25189 248 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 LSM6P62312 80 aaKnown RBP12.62□□□□□ -0.39
CHD3-211ENST00000481999 DHRS2Q13268 280 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 UNC119Q13432 240 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 ZNF260Q3ZCT1 412 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 LIN54Q6MZP7 749 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 FJX1Q86VR8 437 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 GJC3Q8NFK1 279 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 OR5D14Q8NGL3 314 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 OR5M8Q8NGP6 311 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 CXorf58Q96LI9 332 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 KCNMB2Q9Y691 235 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 TNRC6AQ8NDV7 1962 aaKnown RBP12.62□□□□□ -0.39
CHD3-211ENST00000481999 IGKV1-9A0A0C4DH69 117 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 NME2P1O60361 137 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 CYTIPO60759 359 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 FAHP16930 419 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 ZNF708P17019 499 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 NME2P22392 152 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 CD34P28906 385 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 ZNF660Q6AZW8 331 aaPredicted RBP12.62□□□□□ -0.39
CHD3-211ENST00000481999 TRAPPC6BQ86SZ2 158 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 GPR137CQ8N3F9 429 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 PAQR4Q8N4S7 273 aaPredicted RBP12.62□□□□□ -0.39
CHD3-211ENST00000481999 GALNT11Q8NCW6 608 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 CPNE4Q96A23 557 aaPredicted RBP12.62□□□□□ -0.39
CHD3-211ENST00000481999 PGAM5Q96HS1 289 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 SLC7A10Q9NS82 523 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 TMEM38BQ9NVV0 291 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 B4GALT7Q9UBV7 327 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 ACACAQ13085 2346 aa12.62□□□□□ -0.39
CHD3-211ENST00000481999 TRAV14DV4A0A0A6YYC5 116 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 M0R135 149 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 RAB3AP20336 220 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 MPGP29372 298 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 OR3A4PP47883 348 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 ZNF84P51523 738 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 ZNF133P52736 654 aaPredicted RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 SRSF4Q08170 494 aaKnown RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 CDNFQ49AH0 187 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 PDZD9Q8IXQ8 264 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 OR5AS1Q8N127 324 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 CHST4Q8NCG5 386 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 OR4S1Q8NGB4 309 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 OR5M9Q8NGP3 310 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 ZNF799Q96GE5 643 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 FOXB1Q99853 325 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 MOB1AQ9H8S9 216 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 MED12LQ86YW9 2145 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 LOC105371267A0A1B0GV96 52 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 OR14I1A6ND48 311 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 POM121CA8CG34 1229 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 HLA-AP01891 365 aaKnown RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 ERCC1P07992 297 aaPredicted RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 CCL2P13500 99 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 ZNF20P17024 532 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 NUP62P37198 522 aaPredicted RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 GSK3AP49840 483 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 NOVA1P51513 510 aaKnown RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 CXADRP78310 365 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 NKPD1Q17RQ9 610 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 FAM27BQ5VT28 67 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 FOXL2NBQ6ZUU3 175 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 ZNF546Q86UE3 836 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 SKA3Q8IX90 412 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 TMEM104Q8NE00 496 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 NUDT16L1Q9BRJ7 211 aaKnown RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 NICN1Q9BSH3 213 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 PPA2Q9H2U2 334 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 FBLN5Q9UBX5 448 aa12.61□□□□□ -0.39
CHD3-211ENST00000481999 NOSIPQ9Y314 301 aaKnown RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 NOP16Q9Y3C1 178 aaKnown RBP12.61□□□□□ -0.39
CHD3-211ENST00000481999 A0A0D9SG52 128 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 ZNF503-AS2A6NEH8 195 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 KRBOX1C9JBD0 128 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 CSN2P05814 226 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 VSIG8P0DPA2 414 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 MRPS34P82930 218 aaKnown RBP12.6□□□□□ -0.39
CHD3-211ENST00000481999 QRFPP83859 136 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 SLC22A6Q4U2R8 563 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 ZNF529Q6P280 563 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 SLC25A42Q86VD7 318 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 ZDHHC22Q8N966 263 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 GPR35Q9HC97 309 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 PLEKHA6Q9Y2H5 1048 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 OR5H14A6NHG9 310 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 A8MXK9 166 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 SGCEO43556 437 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 DNPH1O43598 174 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 UBBP0CG47 229 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 MGMTP16455 207 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 TBPP20226 339 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 RPS27AP62979 156 aaKnown RBP12.6□□□□□ -0.39
CHD3-211ENST00000481999 UBA52P62987 128 aaKnown RBP12.6□□□□□ -0.39
CHD3-211ENST00000481999 PSG4Q00888 419 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 ZNF766Q5HY98 468 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 CD163Q86VB7 1156 aa12.6□□□□□ -0.39
CHD3-211ENST00000481999 ANGPTL5Q86XS5 388 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms