RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ANXA2P2A6NMY6 339 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF879B4DU55 563 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 C3orf80F5H4A9 247 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 RP2O75695 350 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 SC5DO75845 299 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 PTBP3O95758 552 aaKnown RBP12.49□□□□□ -0.41
COL9A3-209ENST00000469852 GRPP07492 148 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 ERCC1P07992 297 aaPredicted RBP12.49□□□□□ -0.41
COL9A3-209ENST00000469852 TNFSF4P23510 183 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 TGFBR2P37173 567 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF154Q13106 437 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 CRIP3Q6Q6R5 217 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 UNQ9370/PRO34162Q6UXP9 181 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 TMEM91Q6ZNR0 172 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF826PQ6ZT77 177 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 UTS2BQ765I0 119 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 MOGAT3Q86VF5 341 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 C11orf53Q8IXP5 236 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 OR1M1Q8NGA1 313 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 OR51A2Q8NGJ7 313 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 TRMT10AQ8TBZ6 339 aaKnown RBP12.49□□□□□ -0.41
COL9A3-209ENST00000469852 PP6455Q8WZ26 134 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 C10orf35Q96D05 121 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 RNF170Q96K19 258 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 DERL3Q96Q80 235 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 RTL8AQ9BWD3 113 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 PPIL3Q9H2H8 161 aaKnown RBP12.49□□□□□ -0.41
COL9A3-209ENST00000469852 GCM1Q9NP62 436 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 NDUFB11Q9NX14 153 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 TRAV8-7A0A075B6U6 113 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.48□□□□□ -0.41
COL9A3-209ENST00000469852 PQLC2LA1A4F0 135 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 MAGEA13PA6NCF6 341 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF732B4DXR9 585 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 CCRL2O00421 344 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 ATF1P18846 271 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 CRYBB2P43320 205 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 SRP9P49458 86 aaKnown RBP12.48□□□□□ -0.41
COL9A3-209ENST00000469852 ART1P52961 327 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 FABP5Q01469 135 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 ACSM3Q53FZ2 586 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 Q5PR19 223 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF529Q6P280 563 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 DNM1P46Q6ZS02 220 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 CELF2-AS1Q8N7Q2 184 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 SPERTQ8NA61 448 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 OR5A2Q8NGI9 324 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 RDH5Q92781 318 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 RPL3LQ92901 407 aaKnown RBP12.48□□□□□ -0.41
COL9A3-209ENST00000469852 NKX3-1Q99801 234 aaPredicted RBP12.48□□□□□ -0.41
COL9A3-209ENST00000469852 FOXC2Q99958 501 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 MICU1Q9BPX6 476 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 EGLN1Q9GZT9 426 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 ZCCHC4Q9H5U6 513 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 BARX1Q9HBU1 254 aaPredicted RBP12.48□□□□□ -0.41
COL9A3-209ENST00000469852 NOX4Q9NPH5 578 aa12.48□□□□□ -0.41
COL9A3-209ENST00000469852 NOP16Q9Y3C1 178 aaKnown RBP12.48□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF469Q96JG9 3925 aaPredicted RBP12.47□□□□□ -0.41
COL9A3-209ENST00000469852 FAM230AA0A1W2PPH8 454 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 GATBO75879 557 aaKnown RBP12.47□□□□□ -0.41
COL9A3-209ENST00000469852 JUNBP17275 347 aaPredicted RBP12.47□□□□□ -0.41
COL9A3-209ENST00000469852 IGFBP3P17936 291 aaPredicted RBP12.47□□□□□ -0.41
COL9A3-209ENST00000469852 TNFRSF1AP19438 455 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 AZGP1P25311 298 aaKnown RBP12.47□□□□□ -0.41
COL9A3-209ENST00000469852 GABRA5P31644 462 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 GATA4P43694 442 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 CARTPTQ16568 116 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 FAM76BQ5HYJ3 339 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 SERPINA12Q8IW75 414 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 MS4A15Q8N5U1 240 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 CCL17Q92583 94 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 SPACA5Q96QH8 159 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 HIST1H2AAQ96QV6 131 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 TLNRD1Q9H1K6 362 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 OR51I2Q9H344 312 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 ABCB9Q9NP78 766 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 C14orf119Q9NWQ9 140 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 C1orf123Q9NWV4 160 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 PPP1R3CQ9UQK1 317 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 ZFHX3Q15911 3703 aa12.47□□□□□ -0.41
COL9A3-209ENST00000469852 SETD2Q9BYW2 2564 aaPredicted RBP12.46□□□□□ -0.41
COL9A3-209ENST00000469852 IGHV4-30-2A0A087WSY4 118 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 GABRPO00591 440 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 CDIPTO14735 213 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 SULT1B1O43704 296 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 RHBDL1O75783 438 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 RGS9O75916 674 aaPredicted RBP12.46□□□□□ -0.41
COL9A3-209ENST00000469852 CYB5R3P00387 301 aaPredicted RBP12.46□□□□□ -0.41
COL9A3-209ENST00000469852 CD2P06729 351 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 GNG3P63215 75 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 CNN3Q15417 329 aaKnown RBP12.46□□□□□ -0.41
COL9A3-209ENST00000469852 CLEC12BQ2HXU8 276 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 FAM201AQ5SY85 155 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 CEACAM19Q7Z692 300 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 ANGPTL5Q86XS5 388 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 CALHM1Q8IU99 346 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 SCCPDHQ8NBX0 429 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 WFDC11Q8NEX6 87 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 OR5D14Q8NGL3 314 aa12.46□□□□□ -0.41
COL9A3-209ENST00000469852 TMIGD2Q96BF3 282 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms